ViewGene
Locus Name:
GeneID:
Location:

GeneID:2484
TrivialName: PA14_29260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29260
PAO1 Ortholog Locus:PA2696
Sequence Length:894
Protein Length:297
Start: 2531797
Stop: 2532690
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06084.1|AE004697_9 (AE004697) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/297 (100%), Positives = 297/297 (100%)
Sequence:
ATGACTGTTGCCATAGACAGAACAAAGGGCGACCAATCCACGCCAGGGAACATCATAAGGGGAGAAGGGTAC
GCCTTGATTCGCAATAGTGAGGCGACTCCCGATCCGGACAAGGTGATCCATATTCCTTGTGCCGATTCGTTT
TCCGTCATCGTGCAGTTGCGCGATTTCAATTCCCATCGTCTCTGGAATGGAAACAAACTGGTTTTCGATGGC
GGACATCCACGGAAAAGTATCTCCATCGCCTATCTTGGCGATGAAATAAAGTGCCAGCACCGGACAACTTAC
GACAATGTCCGCTTCATGTTGCCGCGCGCTTCGATAAAGGAGTTTCTCTACGAAGAAGGGCAACGCGCGTCC
GCCGAGCCGGAGCGGATCATCGGTGTCGACGATCCGGTGGTCTATCACCTGGCGCTGGCGCTGCTGCCCAGC
TTCGCCAGGGCGGGCGAGCGCAACGAACTGTTCATCGAACAGGTCATGCTGGCGCTGTTGACCCACGTTCAG
GATCGCTTCGCTTCGACCCAGGTCCCGGTCTGCACCGGCAAGGGCCTGGCGCCCTGGCAATTGCGCAGGGCC
AAGGAGCTGATCGCCGGGCATCTGGCCGAGGGCGTATCGGTGGCGCGCCTGGCCGAGGAGTGCGGGCTCTCG
CGCAGCTATTTCACCAAGGCCTTCAAGTGCAGCACCGGTGTTTCGCCCCACGAATGGCTGATGCGCATGCGC
GTCGACCGGGCCAAGGAGCTGATGCTGGGCAGCGACGAACCGCTTTCGCAGATCGGCGTCGCCTGCGGCTTT
TCCGACCAGCCGCATTTCTCGCGGATCTTTCTCCGGCTGGCCGGCGCCTCGCCCTCGACCTGGCGTCGGGTC
AAGCGGCAGCGCACCGACGCAGCGCTCTGA
Translation:
MTVAIDRTKGDQSTPGNIIRGEGYALIRNSEATPDPDKVIHIPCADSFSVIVQLRDFNSHRLWNGNKLVFDG
GHPRKSISIAYLGDEIKCQHRTTYDNVRFMLPRASIKEFLYEEGQRASAEPERIIGVDDPVVYHLALALLPS
FARAGERNELFIEQVMLALLTHVQDRFASTQVPVCTGKGLAPWQLRRAKELIAGHLAEGVSVARLAEECGLS
RSYFTKAFKCSTGVSPHEWLMRMRVDRAKELMLGSDEPLSQIGVACGFSDQPHFSRIFLRLAGASPSTWRRV
KRQRTDAAL*
AnnotationID:2492GeneID:2484
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 19:07:18
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2696
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 89.9 bits (223), Expect = 3e-19
Identities = 29/84 (34%), Positives = 52/84 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4971




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36308




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2484_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2484
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4165
                           PA2696_tr
                           translation of PA2696
                           297
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123542
                           gb|AAG06084.1|AE004697_9
                           (AE004697) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           297
                           99.99
                           99.99
                           0
                           1546.0
     

     
     
123543
                           gb|AAK65663.1|
                           (AE007286) Hypothetical protein [Sinorhizobium meliloti]
                           306
                           37.90
                           55.88
                           13
                           540.0
     

     
     
123545
                           gb|AAK86225.1|
                           (AE007978) AGR_C_720p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           357
                           27.45
                           39.21
                           118
                           309.0
     

     
     
123544
                           gb|AAL41431.1|
                           (AE009012) transcriptional regulator, AraC family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           366
                           26.22
                           36.33
                           142
                           306.0
     

     






      

          
GC ORFID: 45486How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2696Glimmer Score: 

          
Start: 2422129Stop: 2421236

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2696 translation of PA2696Homolog Bit Score 600.0

          
Other Homologs:  t_PA2696 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGTTGCCATAGACAGAACAAAGGGCGACCAATCCACGCCAGGGAACATCATAAGGGGAGAAGGGTAC 
GCCTTGATTCGCAATAGTGAGGCGACTCCCGATCCGGACAAGGTGATCCATATTCCTTGTGCCGATTCGTTT 
TCCGTCATCGTGCAGTTGCGCGATTTCAATTCCCATCGTCTCTGGAATGGAAACAAACTGGTTTTCGATGGC 
GGACATCCACGGAAAAGTATCTCCATCGCCTATCTTGGCGATGAAATAAAGTGCCAGCACCGGACAACTTAC 
GACAATGTCCGCTTCATGTTGCCGCGCGCTTCGATAAAGGAGTTTCTCTACGAAGAAGGGCAACGCGCGTCC 
GCCGAGCCGGAGCGGATCATCGGTGTCGACGATCCGGTGGTCTATCACCTGGCGCTGGCGCTGCTGCCCAGC 
TTCGCCAGGGCGGGCGAGCGCAACGAACTGTTCATCGAACAGGTCATGCTGGCGCTGTTGACCCACGTTCAG 
GATCGCTTCGCTTCGACCCAGGTCCCGGTCTGCACCGGCAAGGGCCTGGCGCCCTGGCAATTGCGCAGGGCC 
AAGGAGCTGATCGCCGGGCATCTGGCCGAGGGCGTATCGGTGGCGCGCCTGGCCGAGGAGTGCGGGCTCTCG 
CGCAGCTATTTCACCAAGGCCTTCAAGTGCAGCACCGGTGTTTCGCCCCACGAATGGCTGATGCGCATGCGC 
GTCGACCGGGCCAAGGAGCTGATGCTGGGCAGCGACGAACCGCTTTCGCAGATCGGCGTCGCCTGCGGCTTT 
TCCGACCAGCCGCATTTCTCGCGGATCTTTCTCCGGCTGGCCGGCGCCTCGCCCTCGACCTGGCGTCGGGTC 
AAGCGGCAGCGCACCGACGCAGCGCTCTGA