ViewGene

Locus Name:
GeneID:
Location:

GeneID:2483
TrivialName: PA14_33170
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33170
PAO1 Ortholog Locus:PA2432
Sequence Length:915
Protein Length:304
Start: 2904250
Stop: 2903336
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05820.1|AE004670_8 (AE004670) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%) with PA2432 of PAO1.
Sequence:
ATGAGCCTGCGCTTCGACGATATCGAAGCCTTCCTCAACGTCGCCGAACTCAACAGCGTGACGTCGGCGGCC
GAGCGCATGAGCCTGTCCAAGTCGGTGATCAGCAAGCGCGTCAGCGATCTCGAACGACGCCTCGGCGTCCGC
CTGCTCTATCGCACCACGCGCAACGTCGAGCCGACCGAGGCCGGGCATTTCTTCTACAAGGCCGCCAAGGCC
TCGCTGCAGGAACTCAACAACGCCGCGGAGATCGTCGCCCTGCGCGAGAACGACCTGTGCGGCGAATTGCGC
ATCGTCACCCCGATGAGCTTCGGCACCCTCTGGCTGTCGCCGATCATCGCCGACTTCATGAGCCAGCACCCG
CGCCTGGAGATCGTCCTGCAGATGGACGACCGCCTCACCGACTTCGAGAAGGAAGGCTACGACCTGAGCATC
CGCGTCACCCGCCTGGACGACAGTTCGCTGATCGCCCGGCCGCTGGCCAACAGCCAGCGGGTGGTCTGCTGC
AGCCCCGACTACGCGGAACGCCACGGCACGCTGGACACCCTCGAACAACTGATGCAGCACGAGTGCCTGGGC
TACAACAACGCCACGCCGAGCCAGGTCTGGACCTTCGAACCGGCGTTCCCCGGTGCCAAGCCCCGCGCCGTC
TCGCCACGCGGACGCTTCAGCAGCAACAACGGCCAGGCCATGCGCGATGCCGCCCTGCGCGGCCAGGGATTG
GCGTTGCTGCCGCTGTTCATCGTCGCCGAGGACCTCAAGAACGGCCGCCTGGTGGACGCCGCGCCCAGCCTG
CGCCCACTCGACGACGTGATCTACGCGATGTATTCGCGGGCGGCGGCGATGTCGCCGAAGGTCAAGGCGTTC
ATCCAGCATCTCCAGCAGGCGCTGTCGATCCCGCCCTGGGGCAACGGCTGA
Translation:
MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPTEAGHFFYKAAKA
SLQELNNAAEIVALRENDLCGELRIVTPMSFGTLWLSPIIADFMSQHPRLEIVLQMDDRLTDFEKEGYDLSI
RVTRLDDSSLIARPLANSQRVVCCSPDYAERHGTLDTLEQLMQHECLGYNNATPSQVWTFEPAFPGAKPRAV
SPRGRFSSNNGQAMRDAALRGQGLALLPLFIVAEDLKNGRLVDAAPSLRPLDDVIYAMYSRAAAMSPKVKAF
IQHLQQALSIPPWGNG*
AnnotationID:2491GeneID:2483
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA2432
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Identical to PA2432 of PAO1.
Structural Features:
Genomic Context:
Comment:
ReferenceID:4969
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22115
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2483

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4163 PA2432_tr translation of PA2432 304 99.67 99.67 0 1546.0
123539 gb|AAG05820.1|AE004670_8 (AE004670) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 99.67 99.67 0 1546.0
4164 PA1201_tr translation of PA1201 304 72.03 85.52 0 1168.0
123540 gb|AAG04590.1|AE004550_6 (AE004550) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 72.03 85.52 0 1168.0
123541 gb|AAQ61143.1| (AE016922) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472] 321 37.38 53.58 23 513.0
GC ORFID: 45485How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2432Glimmer Score:
Start: 2049666Stop: 2050580
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2432 translation of PA2432Homolog Bit Score 600.0
Other Homologs: t_PA1201 (ORF: BLASTX 456.0), t_PA2432 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCTGCGCTTCGACGATATCGAAGCCTTCCTCAACGTCGCCGAACTCAACAGCGTGACGTCGGCGGCC
GAGCGCATGAGCCTGTCCAAGTCGGTGATCAGCAAGCGCGTCAGCGATCTCGAACGACGCCTCGGCGTCCGC
CTGCTCTATCGCACCACGCGCAACGTCGAGCCGACCGAGGCCGGGCATTTCTTCTACAAGGCCGCCAAGGCC
TCGCTGCAGGAACTCAACAACGCCGCGGAGATCGTCGCCCTGCGCGAGAACGACCTGTGCGGCGAATTGCGC
ATCGTCACCCCGATGAGCTTCGGCACCCTCTGGCTGTCGCCGATCATCGCCGACTTCATGAGCCAGCACCCG
CGCCTGGAGATCGTCCTGCAGATGGACGACCGCCTCACCGACTTCGAGAAGGAAGGCTACGACCTGAGCATC
CGCGTCACCCGCCTGGACGACAGTTCGCTGATCGCCCGGCCGCTGGCCAACAGCCAGCGGGTGGTCTGCTGC
AGCCCCGACTACGCGGAACGCCACGGCACGCTGGACACCCTCGAACAACTGATGCAGCACGAGTGCCTGGGC
TACAACAACGCCACGCCGAGCCAGGTCTGGACCTTCGAACCGGCGTTCCCCGGTGCCAAGCCCCGCGCCGTC
TCGCCACGCGGACGCTTCAGCAGCAACAACGGCCAGGCCATGCGCGATGCCGCCCTGCGCGGCCAGGGATTG
GCGTTGCTGCCGCTGTTCATCGTCGCCGAGGACCTCAAGAACGGCCGCCTGGTGGACGCCGCGCCCAGCCTG
CGCCCACTCGACGACGTGATCTACGCGATGTATTCGCGGGCGGCGGCGATGTCGCCGAAGGTCAAGGCGTTC
ATCCAGCATCTCCAGCAGGCGCTGTCGATCCCGCCCTGGGGCAACGGCTGA