ViewGene
Locus Name:
GeneID:
Location:

GeneID:2482
TrivialName: PA14_45060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45060
PAO1 Ortholog Locus:PA1497
Sequence Length:915
Protein Length:304
Start: 4019120
Stop: 4020034
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04886.1|AE004578_8 (AE004578) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 301/304 (99%), Positives = 301/304 (99%)
Sequence:
ATGCCCCTGCAATCTCTCCTCAATGCATCCCGAATCCTCCTGCGCGGCATCAGCCAGGTGTTCCTCCAGGGC
GACCCACGCCTGGGCCTGGCCTGCCTGCTGGCGATCGCCGTCGGCGCGCCGCCGCTGCTCGCCGGCGCCCTC
CTTGGCGGCGCCCTCGGCCCGTTGCTGGCGCGCCTGTTGCACTGCGCCGACAGCGACATCGAGGCCGGGCTG
TACGGCTACAACGCCGTGCTGATCGGCATGCTGCTGGCATTCCGCTTCGCCTGGTCGCCGGGGCTGGTGTCG
CTGGTAGCGCTCGGCTGCCTGGCCAGCGTGGCGTTGCAGCGCCTGTTCCTGCATGGGCTGCGCCGACGCCGC
TGGCTACCGCCCTATACCCTGGGCTTCGTCCTCAACGGCTGGTGGCTGGTGCCCCTCGGCGCCTGGCTAGGC
CTGGCCCCGGCGGCCCATGGCGGCTGCTTCAGCTGCGCCTGGAGCGGCACGGCGGAGCTGGCGGCGCTAACG
CTGGGGATCGGCGAGATCATCTTCCTCGGTGAACCGCTGGCAGGGCTGCTGGTCTGGCTCGGCCTGCTGCTG
GTCTCGCGTCCCTCGGCCGCCTGGGCCCTCGCCGGCGCCGCGGCCAGCCTGCCGCTGGCCTGGCTGCTGGGC
TACGACTGGGCGAGCGCGCTCGCCGGGCTCTACGGCCTGAACGCCGCCCTTGCCGGGCTGGCCCTGGCCTTG
CGCTACCGCAGCGCCTGGCCGCCACTGCTCGGCATGGGCCTGGCGGTGGCGCTGCAACCGCTGTTCGGCCTG
CTCGGCCTGCCGGCGCTGACCGCACCGTTCATCCTCGCCTGCCTGCTCTGCATTGGCGGCGAGCGCCTTTAC
CTGCGCCTGGCCGGCAGCCTCGGCGCGCGCCTCGGCCGGCGGCGCTCCTGA
Translation:
MPLQSLLNASRILLRGISQVFLQGDPRLGLACLLAIAVGAPPLLAGALLGGALGPLLARLLHCADSDIEAGL
YGYNAVLIGMLLAFRFAWSPGLVSLVALGCLASVALQRLFLHGLRRRRWLPPYTLGFVLNGWWLVPLGAWLG
LAPAAHGGCFSCAWSGTAELAALTLGIGEIIFLGEPLAGLLVWLGLLLVSRPSAAWALAGAAASLPLAWLLG
YDWASALAGLYGLNAALAGLALALRYRSAWPPLLGMGLAVALQPLFGLLGLPALTAPFILACLLCIGGERLY
LRLAGSLGARLGRRRS*
AnnotationID:2490GeneID:2482
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 06:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative urea transporter
Cell Localization:()
Synonyms:PA1497
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4413,pfam03253
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4413, Utp, Urea transporter [Amino acid transport and metabolism]
CD-Length = 319 residues, 100.0% aligned
Score =  306 bits (786), Expect = 2e-84
Identities = 201/320 (62%), Positives = 228/320 (71%), Gaps = 17/320 (5%)

pfam03253, UT, Urea transporter.
CD-Length = 303 residues, 100.0% aligned
Score =  257 bits (659), Expect = 9e-70
Identities = 100/303 (33%), Positives = 131/303 (43%), Gaps = 8/303 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4967




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37337




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2482_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2482
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4162
                           PA1497_tr
                           translation of PA1497
                           304
                           99.01
                           99.01
                           0
                           1548.0
     

     
     
123538
                           gb|AAG04886.1|AE004578_8
                           (AE004578) probable transporter [Pseudomonas aeruginosa PAO1]
                           304
                           99.01
                           99.01
                           0
                           1548.0
     

     






      

          
GC ORFID: 45484How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1497Glimmer Score: 

          
Start: 934789Stop: 933875

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1497 translation of PA1497Homolog Bit Score 600.0

          
Other Homologs:  t_PA1497 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCTGCAATCTCTCCTCAATGCATCCCGAATCCTCCTGCGCGGCATCAGCCAGGTGTTCCTCCAGGGC 
GACCCACGCCTGGGCCTGGCCTGCCTGCTGGCGATCGCCGTCGGCGCGCCGCCGCTGCTCGCCGGCGCCCTC 
CTTGGCGGCGCCCTCGGCCCGTTGCTGGCGCGCCTGTTGCACTGCGCCGACAGCGACATCGAGGCCGGGCTG 
TACGGCTACAACGCCGTGCTGATCGGCATGCTGCTGGCATTCCGCTTCGCCTGGTCGCCGGGGCTGGTGTCG 
CTGGTAGCGCTCGGCTGCCTGGCCAGCGTGGCGTTGCAGCGCCTGTTCCTGCATGGGCTGCGCCGACGCCGC 
TGGCTACCGCCCTATACCCTGGGCTTCGTCCTCAACGGCTGGTGGCTGGTGCCCCTCGGCGCCTGGCTAGGC 
CTGGCCCCGGCGGCCCATGGCGGCTGCTTCAGCTGCGCCTGGAGCGGCACGGCGGAGCTGGCGGCGCTAACG 
CTGGGGATCGGCGAGATCATCTTCCTCGGTGAACCGCTGGCAGGGCTGCTGGTCTGGCTCGGCCTGCTGCTG 
GTCTCGCGTCCCTCGGCCGCCTGGGCCCTCGCCGGCGCCGCGGCCAGCCTGCCGCTGGCCTGGCTGCTGGGC 
TACGACTGGGCGAGCGCGCTCGCCGGGCTCTACGGCCTGAACGCCGCCCTTGCCGGGCTGGCCCTGGCCTTG 
CGCTACCGCAGCGCCTGGCCGCCACTGCTCGGCATGGGCCTGGCGGTGGCGCTGCAACCGCTGTTCGGCCTG 
CTCGGCCTGCCGGCGCTGACCGCACCGTTCATCCTCGCCTGCCTGCTCTGCATTGGCGGCGAGCGCCTTTAC 
CTGCGCCTGGCCGGCAGCCTCGGCGCGCGCCTCGGCCGGCGGCGCTCCTGA