ViewGene

Locus Name:
GeneID:
Location:

GeneID:2481
TrivialName: PA14_48770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48770
PAO1 Ortholog Locus:PA1201
Sequence Length:915
Protein Length:304
Start: 4335953
Stop: 4336867
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04590.1|AE004550_6 (AE004550) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGAGCCTGCGCCTTGAAGACATACAGGCCTTCCTCAACGTGGTCGAGCTGGGCAGCATCAGCGCCGCCGCC
GAACGCATGAGCCTGTCCAAGTCCGTGATCAGCAAACGCGTCAGCGACCTGGAGCGCCACCTCGGCGTGCGC
CTGCTCTACCGCTCGACGCGCAACGTCGAGCCGACCGAGGCCGGCGGCTTCTTCTACAAGTCGGCCAAGGCC
TCGCTGCAGGACCTGAACAACGCCGCGGAAAGCGTGGCCCTGCGCGAGAACGACCTGTGCGGGGAATTGCGG
GTGATGGCGCCGATGAGCTTCGGCACGCTCTGGCTGGGGCCGCTGGTGATGGAATTCATGGCGCGCAACCCG
CGCCTGGAAGTGGTCCTGCAACTGGACGACCGGATCGTCGACTTCGAGAAGGAAGGCTATGACCTGGCGATC
CGCATCACCCGCCTGCAGGACAGCTCGCTGATCGCCCGCCAACTGGGCACCAGCCGCCGGGTAGTGTGTTGC
AGCCCGGAATACCTGGAACGGCATGGCCCGCTGCAACGCATCGAAGACATTCTCTGCCATCCCTGCATCGGC
TACAGCCACAACACCCCGTCGCAGCTATGGAGCTTCGAGCCGCGGGTGGCCGGCGAGCCGGCGCGGATGATC
ACCCCGCGCGGACGCTTCAACACCAACAACGGCCAGACCATGCGCGACGCCGCGGTACGCGGCCTGGGCCTG
GCGATGCTGCCGCTGTTCATCGCCGCCGAAGACCTGGCCGCCGGCCGGCTGGTCGAGGCCCTGCCCCAGGAG
CGGCCGCTGGACGACCTGATCTACGCCATGTATTCGCGAGCGGCGACCCTCTCGCCGAAGGTGAAGCTGTTC
GTCCAGTTTCTCCAGCAGGCCCTGGGCAGCCCGCCGTGGGGCGTACGCTGA
Translation:
MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPTEAGGFFYKSAKA
SLQDLNNAAESVALRENDLCGELRVMAPMSFGTLWLGPLVMEFMARNPRLEVVLQLDDRIVDFEKEGYDLAI
RITRLQDSSLIARQLGTSRRVVCCSPEYLERHGPLQRIEDILCHPCIGYSHNTPSQLWSFEPRVAGEPARMI
TPRGRFNTNNGQTMRDAAVRGLGLAMLPLFIAAEDLAAGRLVEALPQERPLDDLIYAMYSRAATLSPKVKLF
VQFLQQALGSPPWGVR*
AnnotationID:2489GeneID:2481
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1201
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD85455.1| (BX321861) Bacterial regulatory protein, LysR family [Nitrosomonas
           europaea ATCC 19718]
          Length = 305

 Score =  215 bits (548), Expect = 2e-55
 Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 7/301 (2%)

>dbj|BAC61559.1| (AP005084) putative transcription regulator protein [Vibrio
           parahaemolyticus]
          Length = 307

 Score =  215 bits (548), Expect = 2e-55
 Identities = 114/299 (38%), Positives = 176/299 (58%), Gaps = 5/299 (1%)

Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.3% aligned
Score =  149 bits (376), Expect = 9e-37
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 13/303 (4%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.6% aligned
Score =  122 bits (307), Expect = 1e-28
Identities = 68/208 (32%), Positives = 94/208 (45%), Gaps = 7/208 (3%)
Genomic Context:
Comment:
ReferenceID:4965
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22111
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37570
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2481_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2481

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4160 PA1201_tr translation of PA1201 304 99.99 99.99 0 1547.0
123529 gb|AAG04590.1|AE004550_6 (AE004550) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 99.99 99.99 0 1547.0
4161 PA2432_tr translation of PA2432 304 72.03 85.52 0 1166.0
123530 gb|AAG05820.1|AE004670_8 (AE004670) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 72.03 85.52 0 1166.0
123535 dbj|BAA17669.1| (D90908) transcriptional regulator [Synechocystis sp. PCC 6803] 308 41.88 58.11 17 525.0
GC ORFID: 45483How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1201Glimmer Score:
Start: 617955Stop: 617041
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1201 translation of PA1201Homolog Bit Score 600.0
Other Homologs: t_PA2432 (ORF: BLASTX 455.0), t_PA1201 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCTGCGCCTTGAAGACATACAGGCCTTCCTCAACGTGGTCGAGCTGGGCAGCATCAGCGCCGCCGCC
GAACGCATGAGCCTGTCCAAGTCCGTGATCAGCAAACGCGTCAGCGACCTGGAGCGCCACCTCGGCGTGCGC
CTGCTCTACCGCTCGACGCGCAACGTCGAGCCGACCGAGGCCGGCGGCTTCTTCTACAAGTCGGCCAAGGCC
TCGCTGCAGGACCTGAACAACGCCGCGGAAAGCGTGGCCCTGCGCGAGAACGACCTGTGCGGGGAATTGCGG
GTGATGGCGCCGATGAGCTTCGGCACGCTCTGGCTGGGGCCGCTGGTGATGGAATTCATGGCGCGCAACCCG
CGCCTGGAAGTGGTCCTGCAACTGGACGACCGGATCGTCGACTTCGAGAAGGAAGGCTATGACCTGGCGATC
CGCATCACCCGCCTGCAGGACAGCTCGCTGATCGCCCGCCAACTGGGCACCAGCCGCCGGGTAGTGTGTTGC
AGCCCGGAATACCTGGAACGGCATGGCCCGCTGCAACGCATCGAAGACATTCTCTGCCATCCCTGCATCGGC
TACAGCCACAACACCCCGTCGCAGCTATGGAGCTTCGAGCCGCGGGTGGCCGGCGAGCCGGCGCGGATGATC
ACCCCGCGCGGACGCTTCAACACCAACAACGGCCAGACCATGCGCGACGCCGCGGTACGCGGCCTGGGCCTG
GCGATGCTGCCGCTGTTCATCGCCGCCGAAGACCTGGCCGCCGGCCGGCTGGTCGAGGCCCTGCCCCAGGAG
CGGCCGCTGGACGACCTGATCTACGCCATGTATTCGCGAGCGGCGACCCTCTCGCCGAAGGTGAAGCTGTTC
GTCCAGTTTCTCCAGCAGGCCCTGGGCAGCCCGCCGTGGGGCGTACGCTGA