ViewGene
Locus Name:
GeneID:
Location:

GeneID:2480
TrivialName: PA14_51090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51090
PAO1 Ortholog Locus:PA1023
Sequence Length:918
Protein Length:305
Start: 4540982
Stop: 4540065
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04412.1|AE004534_10 (AE004534) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 304/305 (99%), Positives = 304/305 (99%)
Sequence:
ATGAGTAGCAGACTCAATGAAGGCAAGGTCGCGATCGTTACCGGCGCGGGCGGCGGCATCGGCCGCGAGATC
GCCCTGGCCCTGGCCGATTCCGGGGCACGGGTGGTGATCAACGATATCGGCGTATCGCTACAGGGCGAGGGC
GGGTCGGCCTCGCCGGCCGAAGAGACCCTTGGCCTGATCCGCCAGCGAGGCGGCGAAGGCCTGATCAACACC
GACAGCGTCGCCGACTGGGACAGCGCGCGGCGTATCGTCGAATGCGCCATGGACGGTTTCGGGCGTCTGGAT
ATCGTGGTGAACAACGCTGGCATCCTGCGCGATGCGATCTTCCACAAGATGAGCGCCGACGACTGGCTGTCG
GTGATCAATGTCCATCTCAACGGCAGCTTCTTCGTCAGCCGGGCCGCCGCCGAACGCTTCCGTACCCAGCAG
GCCGGCGCCTTCGTACACATGACCAGCACTTCCGGGCTGATCGGCAACTTCGGCCAGGCCAATTATTCCGCG
GCCAAGCTGGGCATCGTCGCCTTGAGCAAATCCATCGCCCTCGACATGCAGCGCTACAACGTGCGTTCGAAT
TGCATCGCGCCGTTCGCCTGGAGCCGGATGACCGACTCGATTCCGGCCGAAACCCCGGAGCAGAAGGCCCGC
GTCGACAAGCTGCAGCGCATGACCCCCGAGAAGAACGCGCCGCTGGCCGTCTACCTGGCGTCCGACGCCGCC
CGCGAGGTCACCGGCCAGGTGTTCGCCGCGCGTCACCACGAACTCTTCCTGATGAGTCAGAGCCGGCCGCTG
CGCAGTGTGCATAGCGAGCGCGGCTGGACCCCGGAGAGCATCGCCGAGCACGGCATGCCGGCGTTGCGCGGC
AGCTTCATGGACCTGGCGCGCAGCCCGGACGTGTTCTCCTGGGACCCGATCTGA
Translation:
MSSRLNEGKVAIVTGAGGGIGREIALALADSGARVVINDIGVSLQGEGGSASPAEETLGLIRQRGGEGLINT
DSVADWDSARRIVECAMDGFGRLDIVVNNAGILRDAIFHKMSADDWLSVINVHLNGSFFVSRAAAERFRTQQ
AGAFVHMTSTSGLIGNFGQANYSAAKLGIVALSKSIALDMQRYNVRSNCIAPFAWSRMTDSIPAETPEQKAR
VDKLQRMTPEKNAPLAVYLASDAAREVTGQVFAARHHELFLMSQSRPLRSVHSERGWTPESIAEHGMPALRG
SFMDLARSPDVFSWDPI*
AnnotationID:2488GeneID:2480
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:21
Gene Name:
Confidence Code:3
GeneProduct:probable short-chain dehydrogenase
Cell Localization:(1) Cytoplasmic
Synonyms:PA1023
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106, COG1028
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. Score: 160, 1e-40
COG1028, FabG, Dehydrogenases with different specificities (related to
short-chain alcohol dehydrogenases). Score: 149, 4e-37






   
Genomic Context:






   
Comment:


















    ReferenceID:4963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2480
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4158
                           PA1023_tr
                           translation of PA1023
                           305
                           99.67
                           99.67
                           0
                           1546.0
     

     
     
123512
                           gb|AAG04412.1|AE004534_10
                           (AE004534) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           305
                           99.67
                           99.67
                           0
                           1546.0
     

     
     
123514
                           dbj|BAC48222.1|
                           (AP005945) bll2957 [Bradyrhizobium japonicum USDA 110]
                           305
                           65.24
                           79.01
                           1
                           1005.0
     

     
     
123513
                           dbj|BAC51637.1|
                           (AP005958) bll6372 [Bradyrhizobium japonicum USDA 110]
                           306
                           65.03
                           77.45
                           1
                           1024.0
     

     
     
123515
                           emb|CAE27216.1|
                           (BX572598) putative dehydrogenase [Rhodopseudomonas palustris CGA009]
                           305
                           63.60
                           79.67
                           1
                           989.0
     

     






      

          
GC ORFID: 45482How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1023Glimmer Score: 

          
Start: 412926Stop: 413843

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1023 translation of PA1023Homolog Bit Score 600.0

          
Other Homologs:  t_PA3427 (ORF: BLASTX 208.0), psyr_15may02_Scaffold3_revised_gene4352 (ORF: BLASTX 193.0), t_PA1023 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAGCAGACTCAATGAAGGCAAGGTCGCGATCGTTACCGGCGCGGGCGGCGGCATCGGCCGCGAGATC 
GCCCTGGCCCTGGCCGATTCCGGGGCACGGGTGGTGATCAACGATATCGGCGTATCGCTACAGGGCGAGGGC 
GGGTCGGCCTCGCCGGCCGAAGAGACCCTTGGCCTGATCCGCCAGCGAGGCGGCGAAGGCCTGATCAACACC 
GACAGCGTCGCCGACTGGGACAGCGCGCGGCGTATCGTCGAATGCGCCATGGACGGTTTCGGGCGTCTGGAT 
ATCGTGGTGAACAACGCTGGCATCCTGCGCGATGCGATCTTCCACAAGATGAGCGCCGACGACTGGCTGTCG 
GTGATCAATGTCCATCTCAACGGCAGCTTCTTCGTCAGCCGGGCCGCCGCCGAACGCTTCCGTACCCAGCAG 
GCCGGCGCCTTCGTACACATGACCAGCACTTCCGGGCTGATCGGCAACTTCGGCCAGGCCAATTATTCCGCG 
GCCAAGCTGGGCATCGTCGCCTTGAGCAAATCCATCGCCCTCGACATGCAGCGCTACAACGTGCGTTCGAAT 
TGCATCGCGCCGTTCGCCTGGAGCCGGATGACCGACTCGATTCCGGCCGAAACCCCGGAGCAGAAGGCCCGC 
GTCGACAAGCTGCAGCGCATGACCCCCGAGAAGAACGCGCCGCTGGCCGTCTACCTGGCGTCCGACGCCGCC 
CGCGAGGTCACCGGCCAGGTGTTCGCCGCGCGTCACCACGAACTCTTCCTGATGAGTCAGAGCCGGCCGCTG 
CGCAGTGTGCATAGCGAGCGCGGCTGGACCCCGGAGAGCATCGCCGAGCACGGCATGCCGGCGTTGCGCGGC 
AGCTTCATGGACCTGGCGCGCAGCCCGGACGTGTTCTCCTGGGACCCGATCTGA