ViewGene
Locus Name:
GeneID:
Location:

GeneID:248
TrivialName: PA14_05640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05640
PAO1 Ortholog Locus:PA0434
Sequence Length:2193
Protein Length:730
Start: 499715
Stop: 501907
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03823.1|AE004480_7 (AE004480) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 722/730 (98%), Positives = 724/730 (99%)
Sequence:
ATGAAAAAGCATTCCACGGCCCGCCGCGTCCTCGCGCTGGGTCTCAACCTCACCCTGGCCGGCGTTCCGGCC
TGGCTCTGGGCCGATGAGGAACCCACCGAACTGCCCGCCCTCACCGTCAGCGCCGGCGCCGCCGGGGAAACC
CCGCCGGCCCTCGATCTCGACGACAGCGCCGGCGGCGGCTCGCGCCTGGGCCTGAGCCTGCGCGAGACTCCC
GGCTCGGTAAGCGTGGCCAACCGTGCCAGCTTCGAGCGGCGCGGCCTGCGCAGCACCCAGGACATCGCCAAC
AGCCTGCCCGGCGTGAACGCCTCGGCGCCGCCCGGCTTCGGCGGCTTCGTCACCTACCGCGGCTTCAGCTCG
AACCAGGTCAACCAGTTGTTCAACGGCATTCCGGTGCAATACAGCAGCGCCATGCGTCCGCTGGACGACTGG
ATCGTCGACCGCGTCGAGCTGGTCGGCGGTCCGTCCTCCTTCCTCAACGGCGCCGGTGCCGTCGGCGGCTCG
CTGGACTACATCAGCAAGCTCGCCGACCGCTACGGCGATTTCATGGAAGGCCGGGTGCGCTATGGCAGCTAC
GACGATTCGGAAGTCGCCTTCGGCTTCAACCAGGCCCTGGGCATCGGCCCCGAGCCGAAGCACTTCGTGCGC
CTGGACGTCAGCCGCAGCGGCGGCAACGGCTACGTCGACCGCAATTCGCGCGAATCGTGGAACGTCGCTTTC
TCCCTGCTCAGCGACCTGACCCCGGACCTTTCCCACACCCTGGCCCTGGAGTACCAGGACGAGCAGGAAGAC
AGCCCCTACTGGGGCACACCGGTGCTCAATCCCTACGCCGGCGAGCTGAAGATCGACAAGAGCCGTCGCCGC
GAGAACTACAACGTCGCCGATGGCCGCTACGAACAGCGCGTGCGCTGGCTGCGCTCGATCCTCGAATACCGG
GTCAGCGACAGCACGCGCTGGCGCAACACCTTCTACCACTACGACGCCGAGCGCGATTACCGCAACCTCGAG
ACCTACCGCTACAACGCCGACAACAGCGGGGTGGTGCGCTCCAACGCATTCCTCCAGCGCCACGACCAGCAG
CTCAACGGCAACCGCTTCGAGCTACAGCACAGCCAGCCGCTGTTCGGACTGGCCAGCGACTGGGCGCTGGGT
TTCGACTACAGCATCAACAAGCAGACGCGCTTCCCGAGTACCGCCTCCGGGCCGTTCGGTACGGTCGATCCG
GCCAGTTTCGAGCCGGGCCACTTCTACGACCTGCCGGGCATGCGTCCCGGCCACCGGAAGGACCGCAGCAAC
GAGGTGCGCACCAGCGCGTTGTTCGCCGAGAACCGCCTGGGCCTGACCGACGAGCTGTCGCTGGTCACCGGG
CTGCGCTACGACCACCTCGACCTCGACGTGCGCAACCATCGGACGGTGACCGCCAGCGATCCTGCACACTTC
GAACGGCGCTGGGACGTACTCACCGGGCGCGCCGGGCTGGTCTACCAGTTCACCCCGCACGCCAACGTCTAC
CTGCAATACAGTACCGCCGCCGACCCGCCGGGCGGGGTGCTGACCAGCGCCAGCTTCGGCCAGGTCCGCGAC
TACGACCTGTCCACCGGCGACCAGTGGGAGCTGGGCAGCAAGTTCGATTTCCTCGACGGTCGCGGCAGCGCC
ACCCTGGCCGCCTACCGCATCGTCCGCCGGGACTTCTCGGTGGCCGACCCGAACAACCCCAACCTCAGCGTG
CCGGTGGGCCAGCAGACCTCCAGGGGCATCGAGGCCGCCGCCTCCCTGCGGATCACCCCGAAGCTGCTGGCC
GAGGGCAATTTCGCCTGGGTCGACGCGCAGTACGACGAGTTCACCGAGAACGTCGGCGGCGTCGCCGTCTCG
CGCAAGGGCAAGACGCCGCCGAACGTGCCGGAGCGGGTCGGCAACCTGTGGCTGACCTACGACTTCGACCCG
GCCTGGCAGGGCGGGGTGGACGCGCGCTACGTGTCCTCGGTGTACGCCAACAACGCCAACACCTGGCACGTG
CCGTCCTATACGGTCTACGGGACTTTCCTCAGCTACCGGCTGGACGAGCGCACGCGGATCACCGGGCGCGTG
CGCAACCTCACCGACGAGGTCTACGCGCGCTTCGTGCAGAGCACGCCGCTGTACTACGTCGGCGACCCGCGC
ACCTTCGAGCTGAGCGTGCAGACGCGCTTCTGA
Translation:
MKKHSTARRVLALGLNLTLAGVPAWLWADEEPTELPALTVSAGAAGETPPALDLDDSAGGGSRLGLSLRETP
GSVSVANRASFERRGLRSTQDIANSLPGVNASAPPGFGGFVTYRGFSSNQVNQLFNGIPVQYSSAMRPLDDW
IVDRVELVGGPSSFLNGAGAVGGSLDYISKLADRYGDFMEGRVRYGSYDDSEVAFGFNQALGIGPEPKHFVR
LDVSRSGGNGYVDRNSRESWNVAFSLLSDLTPDLSHTLALEYQDEQEDSPYWGTPVLNPYAGELKIDKSRRR
ENYNVADGRYEQRVRWLRSILEYRVSDSTRWRNTFYHYDAERDYRNLETYRYNADNSGVVRSNAFLQRHDQQ
LNGNRFELQHSQPLFGLASDWALGFDYSINKQTRFPSTASGPFGTVDPASFEPGHFYDLPGMRPGHRKDRSN
EVRTSALFAENRLGLTDELSLVTGLRYDHLDLDVRNHRTVTASDPAHFERRWDVLTGRAGLVYQFTPHANVY
LQYSTAADPPGGVLTSASFGQVRDYDLSTGDQWELGSKFDFLDGRGSATLAAYRIVRRDFSVADPNNPNLSV
PVGQQTSRGIEAAASLRITPKLLAEGNFAWVDAQYDEFTENVGGVAVSRKGKTPPNVPERVGNLWLTYDFDP
AWQGGVDARYVSSVYANNANTWHVPSYTVYGTFLSYRLDERTRITGRVRNLTDEVYARFVQSTPLYYVGDPR
TFELSVQTRF*
AnnotationID:258GeneID:248
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:08
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane ferric siderophore receptor
Cell Localization:()
Synonyms:bfrG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative putative TonB-dependent receptor
Functional Category Confidence Code:5
COGs:pfam00593,COG1629
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68936.1|AE016525_3 (AE016786) outer membrane ferric siderophore receptor, putative
           [Pseudomonas putida KT2440]
          Length = 728

 Score =  864 bits (2233), Expect = 0.0
 Identities = 427/714 (59%), Positives = 516/714 (72%), Gaps = 8/714 (1%)

>gb|AAO56350.1| (AE016866) TonB-dependent receptor, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 784

 Score =  852 bits (2201), Expect = 0.0
 Identities = 426/715 (59%), Positives = 516/715 (72%), Gaps = 8/715 (1%)

>emb|CAE31792.1| (BX640440) putative TonB-dependent receptor [Bordetella
           bronchiseptica]
          Length = 732

 Score =  696 bits (1796), Expect = 0.0
 Identities = 361/726 (49%), Positives = 479/726 (65%), Gaps = 10/726 (1%)








 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  210 bits (534), Expect = 5e-55
Identities = 170/729 (23%), Positives = 269/729 (36%), Gaps = 84/729 (11%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.2% aligned
Score =  183 bits (464), Expect = 6e-47
Identities = 183/773 (23%), Positives = 282/773 (36%), Gaps = 58/773 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33757




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:248_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
422
                           PA0434_tr
                           translation of PA0434
                           730
                           98.90
                           99.17
                           0
                           3814.0
     

     
     
23321
                           gb|AAG03823.1|AE004480_7
                           (AE004480) hypothetical protein PA0434 [Pseudomonas aeruginosa PAO1]
                           730
                           98.90
                           99.17
                           0
                           3814.0
     

     
     
23322
                           gb|AAN68936.1|AE016525_3
                           (AE016786) outer membrane ferric siderophore receptor, putative [Pseudomonas putida KT2440]
                           737
                           58.75
                           71.09
                           16
                           2241.0
     

     
     
23323
                           gb|AAO56350.1|
                           (AE016866) TonB-dependent receptor, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           792
                           54.41
                           66.03
                           70
                           2210.0
     

     
     
23324
                           emb|CAE31792.1|
                           (BX640440) putative TonB-dependent receptor [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           738
                           50.00
                           66.12
                           14
                           1811.0
     

     






      

          
GC ORFID: 43250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0434Glimmer Score: 

          
Start: 6301057Stop: 6303249

          
Length: 2193


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0434 translation of PA0434Homolog Bit Score 1473.0

          
Other Homologs:  t_PA0434 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAGCATTCCACGGCCCGCCGCGTCCTCGCGCTGGGTCTCAACCTCACCCTGGCCGGCGTTCCGGCC 
TGGCTCTGGGCCGATGAGGAACCCACCGAACTGCCCGCCCTCACCGTCAGCGCCGGCGCCGCCGGGGAAACC 
CCGCCGGCCCTCGATCTCGACGACAGCGCCGGCGGCGGCTCGCGCCTGGGCCTGAGCCTGCGCGAGACTCCC 
GGCTCGGTAAGCGTGGCCAACCGTGCCAGCTTCGAGCGGCGCGGCCTGCGCAGCACCCAGGACATCGCCAAC 
AGCCTGCCCGGCGTGAACGCCTCGGCGCCGCCCGGCTTCGGCGGCTTCGTCACCTACCGCGGCTTCAGCTCG 
AACCAGGTCAACCAGTTGTTCAACGGCATTCCGGTGCAATACAGCAGCGCCATGCGTCCGCTGGACGACTGG 
ATCGTCGACCGCGTCGAGCTGGTCGGCGGTCCGTCCTCCTTCCTCAACGGCGCCGGTGCCGTCGGCGGCTCG 
CTGGACTACATCAGCAAGCTCGCCGACCGCTACGGCGATTTCATGGAAGGCCGGGTGCGCTATGGCAGCTAC 
GACGATTCGGAAGTCGCCTTCGGCTTCAACCAGGCCCTGGGCATCGGCCCCGAGCCGAAGCACTTCGTGCGC 
CTGGACGTCAGCCGCAGCGGCGGCAACGGCTACGTCGACCGCAATTCGCGCGAATCGTGGAACGTCGCTTTC 
TCCCTGCTCAGCGACCTGACCCCGGACCTTTCCCACACCCTGGCCCTGGAGTACCAGGACGAGCAGGAAGAC 
AGCCCCTACTGGGGCACACCGGTGCTCAATCCCTACGCCGGCGAGCTGAAGATCGACAAGAGCCGTCGCCGC 
GAGAACTACAACGTCGCCGATGGCCGCTACGAACAGCGCGTGCGCTGGCTGCGCTCGATCCTCGAATACCGG 
GTCAGCGACAGCACGCGCTGGCGCAACACCTTCTACCACTACGACGCCGAGCGCGATTACCGCAACCTCGAG 
ACCTACCGCTACAACGCCGACAACAGCGGGGTGGTGCGCTCCAACGCATTCCTCCAGCGCCACGACCAGCAG 
CTCAACGGCAACCGCTTCGAGCTACAGCACAGCCAGCCGCTGTTCGGACTGGCCAGCGACTGGGCGCTGGGT 
TTCGACTACAGCATCAACAAGCAGACGCGCTTCCCGAGTACCGCCTCCGGGCCGTTCGGTACGGTCGATCCG 
GCCAGTTTCGAGCCGGGCCACTTCTACGACCTGCCGGGCATGCGTCCCGGCCACCGGAAGGACCGCAGCAAC 
GAGGTGCGCACCAGCGCGTTGTTCGCCGAGAACCGCCTGGGCCTGACCGACGAGCTGTCGCTGGTCACCGGG 
CTGCGCTACGACCACCTCGACCTCGACGTGCGCAACCATCGGACGGTGACCGCCAGCGATCCTGCACACTTC 
GAACGGCGCTGGGACGTACTCACCGGGCGCGCCGGGCTGGTCTACCAGTTCACCCCGCACGCCAACGTCTAC 
CTGCAATACAGTACCGCCGCCGACCCGCCGGGCGGGGTGCTGACCAGCGCCAGCTTCGGCCAGGTCCGCGAC 
TACGACCTGTCCACCGGCGACCAGTGGGAGCTGGGCAGCAAGTTCGATTTCCTCGACGGTCGCGGCAGCGCC 
ACCCTGGCCGCCTACCGCATCGTCCGCCGGGACTTCTCGGTGGCCGACCCGAACAACCCCAACCTCAGCGTG 
CCGGTGGGCCAGCAGACCTCCAGGGGCATCGAGGCCGCCGCCTCCCTGCGGATCACCCCGAAGCTGCTGGCC 
GAGGGCAATTTCGCCTGGGTCGACGCGCAGTACGACGAGTTCACCGAGAACGTCGGCGGCGTCGCCGTCTCG 
CGCAAGGGCAAGACGCCGCCGAACGTGCCGGAGCGGGTCGGCAACCTGTGGCTGACCTACGACTTCGACCCG 
GCCTGGCAGGGCGGGGTGGACGCGCGCTACGTGTCCTCGGTGTACGCCAACAACGCCAACACCTGGCACGTG 
CCGTCCTATACGGTCTACGGGACTTTCCTCAGCTACCGGCTGGACGAGCGCACGCGGATCACCGGGCGCGTG 
CGCAACCTCACCGACGAGGTCTACGCGCGCTTCGTGCAGAGCACGCCGCTGTACTACGTCGGCGACCCGCGC 
ACCTTCGAGCTGAGCGTGCAGACGCGCTTCTGA