ViewGene

Locus Name:
GeneID:
Location:

GeneID:2479
TrivialName: PA14_23050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23050
PAO1 Ortholog Locus:PA3185
Sequence Length:852
Protein Length:283
Start: 1998255
Stop: 1999106
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06573.1|AE004742_9 (AE004742) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 282/283 (99%), Positives = 283/283 (100%)
Sequence:
ATGCTTGAGCATCCGCTGCAGCGTTTCTTTCATTCCATGCGGGCCAAGCGACCGTTCGACTGGGTACGCTTC
CAACGTCGCGATCTGCTGTTGATCGACCATCCGCTGTGCCAGGCCGTATTCAGTCGGCAAGGAGCGCAGCTC
CTGCATTTCCAGCCGCAGGGCGAACGCCCGTTGCTGTGGTGCGCCAGCGAATGGCCGGCCCTCAGCAGTGCG
CCGGTGCGCGGCGGCATCCCGGTCTGCTGGCCGTGGTTCGGCAGCCATCCGAACGGCAGCGAATGGCCGCAG
CAGGGCTGGGCGCGGCAACGCGAATGGCGCCTGCTGGATGCCTACGCCGACGAAAGCAAGGTGGTGGTGAGC
TGGCAACTGGACCTGGAGGACTGGCACGTGCGCCTCGATGCGCGCCTTGGCCAGCGCCTGGAGCTGGAGCTG
TGCAGCTACCATGAGGAAGACGACGATTGCCTGTTCAGCTTCGCCCTGCAGCCCTACTGGCGGGTCGGCGCG
CTGAGCCGGGTGGTGGTGCACGGCATGGAGCTGGAGTCGGCTCGCGGCCAGCGCGGCGCTTCGCGGATTCCG
GGAACCTGGATACCGCGCGGCGCGGTCAAGCAGGTGCTCTACCATCCCGGATCGCTGGTGCTGGAGGACGGC
GGCTGGAACCGCCGCTTGCGGATCGACAAGAACGTCAGCGCCGGCAGCGTGATCTGGCACCCCGGCAGCCGC
CCGGTGGAGCAGGTCGAGCCGGGCGAAGCGGAACGCTTCCTCTGTATCGGCGCCGCTGGCTACCGCCCGGGT
GGGCTGATCCTGGCGCCCGGCGAACGCATGCGCCTGAGTCTCGCCGCCGGCCTGCAATAG
Translation:
MLEHPLQRFFHSMRAKRPFDWVRFQRRDLLLIDHPLCQAVFSRQGAQLLHFQPQGERPLLWCASEWPALSSA
PVRGGIPVCWPWFGSHPNGSEWPQQGWARQREWRLLDAYADESKVVVSWQLDLEDWHVRLDARLGQRLELEL
CSYHEEDDDCLFSFALQPYWRVGALSRVVVHGMELESARGQRGASRIPGTWIPRGAVKQVLYHPGSLVLEDG
GWNRRLRIDKNVSAGSVIWHPGSRPVEQVEPGEAERFLCIGAAGYRPGGLILAPGERMRLSLAAGLQ*
AnnotationID:2487GeneID:2479
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:59
Gene Name:
Confidence Code:3
GeneProduct:putative aldose 1-epimerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0676,pfam01263
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0676, Uncharacterized enzymes related to aldose 1-epimerase 
[Carbohydrate transport and metabolism]
CD-Length = 287 residues,  99.3% aligned
Score =  294 bits (753), Expect = 1e-80
Identities = 95/291 (32%), Positives = 136/291 (46%), Gaps = 17/291 (5%)

pfam01263, Aldose_epim, Aldose 1-epimerase.
CD-Length = 301 residues,  99.3% aligned
Score = 95.1 bits (236), Expect = 9e-21
Identities = 58/307 (18%), Positives = 98/307 (31%), Gaps = 63/307 (20%)
Genomic Context:
Comment:
ReferenceID:4961
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22107
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32358
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2479_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2479

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4157 PA3185_tr translation of PA3185 283 99.64 99.99 0 1550.0
123509 gb|AAG06573.1|AE004742_9 (AE004742) hypothetical protein PA3185 [Pseudomonas aeruginosa PAO1] 283 99.64 99.99 0 1550.0
123510 gb|AAN66645.1|AE016292_5 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 288 48.61 64.58 9 738.0
123511 gb|AAO54822.1| (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 301 45.18 60.79 28 729.0
GC ORFID: 45481How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3185Glimmer Score:
Start: 2955676Stop: 2954825
Length: 852
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3185 translation of PA3185Homolog Bit Score 601.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4423 (ORF: BLASTX 283.0), t_PA3185 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTGAGCATCCGCTGCAGCGTTTCTTTCATTCCATGCGGGCCAAGCGACCGTTCGACTGGGTACGCTTC
CAACGTCGCGATCTGCTGTTGATCGACCATCCGCTGTGCCAGGCCGTATTCAGTCGGCAAGGAGCGCAGCTC
CTGCATTTCCAGCCGCAGGGCGAACGCCCGTTGCTGTGGTGCGCCAGCGAATGGCCGGCCCTCAGCAGTGCG
CCGGTGCGCGGCGGCATCCCGGTCTGCTGGCCGTGGTTCGGCAGCCATCCGAACGGCAGCGAATGGCCGCAG
CAGGGCTGGGCGCGGCAACGCGAATGGCGCCTGCTGGATGCCTACGCCGACGAAAGCAAGGTGGTGGTGAGC
TGGCAACTGGACCTGGAGGACTGGCACGTGCGCCTCGATGCGCGCCTTGGCCAGCGCCTGGAGCTGGAGCTG
TGCAGCTACCATGAGGAAGACGACGATTGCCTGTTCAGCTTCGCCCTGCAGCCCTACTGGCGGGTCGGCGCG
CTGAGCCGGGTGGTGGTGCACGGCATGGAGCTGGAGTCGGCTCGCGGCCAGCGCGGCGCTTCGCGGATTCCG
GGAACCTGGATACCGCGCGGCGCGGTCAAGCAGGTGCTCTACCATCCCGGATCGCTGGTGCTGGAGGACGGC
GGCTGGAACCGCCGCTTGCGGATCGACAAGAACGTCAGCGCCGGCAGCGTGATCTGGCACCCCGGCAGCCGC
CCGGTGGAGCAGGTCGAGCCGGGCGAAGCGGAACGCTTCCTCTGTATCGGCGCCGCTGGCTACCGCCCGGGT
GGGCTGATCCTGGCGCCCGGCGAACGCATGCGCCTGAGTCTCGCCGCCGGCCTGCAATAG