ViewGene
Locus Name:
GeneID:
Location:

GeneID:2478
TrivialName: PA14_27440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27440
PAO1 Ortholog Locus:PA2834
Sequence Length:966
Protein Length:321
Start: 2382941
Stop: 2381976
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06222.1|AE004710_4 (AE004710) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 294/316 (93%), Positives = 307/316 (97%)
Sequence:
TTGCGCACTCAAGGGTGCTTATACTTCCACTCCATGCATCTTCCCGATATGAATCTCCTGGTCGCCCTCAAC
GTTCTTCTCGAAGAGGGCAGCGTGGTCGGAGCCGCGCGCCGCATGCACCTCAGCCCACCGGCGATGAGCCGT
ACCCTGTCGCGGATCCGCGAGGCGGTAGGCGACCCGATCATGGTCCGCGCCGGCCGCAAGCTGGTGCCCACG
CCCCGCGCCCTGGAACTGCAAGAGCAGGTCCGGCAACTGGTGGACCAGGCCCGCGACCTGTTCAACACCCGC
GAGACCATCCAACTGGACAAGCTGGAGCGCTGCTTCACCCTGCGTTCCAACAACACCCTGGTCGGCGGTCTG
GCCACCCGCATACTGGAAATCTTCAGCAAGGAAGCGCCACGCTGTACCCTGCGCTTCGCCCCGGAATCGGAC
ATAGACGACGAAGCCCTGCGGCAGAACCGCATCGACCTCTACATCGGCGCCTCGTCCTGGATGGAGCCCGAG
GTCAAGACCCAGCAACTGCTCACCACCCGCTTCGTCGGCCTGGCCCGCCAGGGGCATCCGATCTTCGACGAC
GACATCACCCCGCAGCGCTTCGCCGCCTTCCCCCACATCAGCGTCTCGCGCCGCGGACTCCACCACGGCCCG
CTGGACCAAGCCCTGGGAGAGCTGGGGGTGACCCGCCAGGTCAAGCTGGTCTGCGCAACCTTCCACTCGGCG
ATCTTCGCCCTGCCCGGTTCCGACCTGCTGCTGCCGATCGCCGAGCACTCCCTGTGGCGGGCCAACCGACTG
GGCCTGGGCCTGCGCCAGTTCGACATCCCGGTGCCATTGAAGACCGTGATGGTGGTCCAGGCCTGGCATCCA
CGCTTCGACAACGATCCCGCGCACCGCTGGTTCCGGCAAACGGTCAAGCGGCTTTGCGAGGAAGTGCAGAAC
GATCCCCATCCGCTGCTGGGCTCCAACTGA
Translation:
MRTQGCLYFHSMHLPDMNLLVALNVLLEEGSVVGAARRMHLSPPAMSRTLSRIREAVGDPIMVRAGRKLVPT
PRALELQEQVRQLVDQARDLFNTRETIQLDKLERCFTLRSNNTLVGGLATRILEIFSKEAPRCTLRFAPESD
IDDEALRQNRIDLYIGASSWMEPEVKTQQLLTTRFVGLARQGHPIFDDDITPQRFAAFPHISVSRRGLHHGP
LDQALGELGVTRQVKLVCATFHSAIFALPGSDLLLPIAEHSLWRANRLGLGLRQFDIPVPLKTVMVVQAWHP
RFDNDPAHRWFRQTVKRLCEEVQNDPHPLLGSN*
AnnotationID:2486GeneID:2478
AnnotatorUID: diggins
Modification Date/Time: 2004-12-02 19:07:51
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:trpR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative regulator gene of toluene-induced toluene exclusion pump
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL95699.1|AF360362_1 (AF360362) TrpR [Pseudomonas putida]
          Length = 301

 Score =  351 bits (901), Expect = 3e-96
 Identities = 177/294 (60%), Positives = 222/294 (75%), Gaps = 1/294 (0%)

>gb|AAN66894.1|AE016318_1 (AE016778) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 301

 Score =  342 bits (878), Expect = 1e-93
 Identities = 176/294 (59%), Positives = 218/294 (74%), Gaps = 1/294 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36187




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2478_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2478
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4156
                           PA2834_tr
                           translation of PA2834
                           321
                           91.58
                           95.63
                           2
                           1548.0
     

     
     
123498
                           gb|AAG06222.1|AE004710_4
                           (AE004710) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           321
                           91.58
                           95.63
                           2
                           1548.0
     

     
     
123499
                           gb|AAL95699.1|AF360362_1
                           (AF360362) TrpR [Pseudomonas putida]
                           322
                           55.90
                           70.18
                           22
                           902.0
     

     
     
123500
                           gb|AAN66894.1|AE016318_1
                           (AE016778) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           322
                           55.59
                           68.94
                           22
                           881.0
     

     
     
123501
                           dbj|BAB48582.1|
                           (AP002996) probable transcriptional regulator [Mesorhizobium loti]
                           321
                           43.61
                           55.76
                           25
                           650.0
     

     






      

          
GC ORFID: 45480How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2834Glimmer Score: 

          
Start: 2570986Stop: 2571951

          
Length: 966


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2834 translation of PA2834Homolog Bit Score 601.0

          
Other Homologs:  t_PA2834 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCGCACTCAAGGGTGCTTATACTTCCACTCCATGCATCTTCCCGATATGAATCTCCTGGTCGCCCTCAAC 
GTTCTTCTCGAAGAGGGCAGCGTGGTCGGAGCCGCGCGCCGCATGCACCTCAGCCCACCGGCGATGAGCCGT 
ACCCTGTCGCGGATCCGCGAGGCGGTAGGCGACCCGATCATGGTCCGCGCCGGCCGCAAGCTGGTGCCCACG 
CCCCGCGCCCTGGAACTGCAAGAGCAGGTCCGGCAACTGGTGGACCAGGCCCGCGACCTGTTCAACACCCGC 
GAGACCATCCAACTGGACAAGCTGGAGCGCTGCTTCACCCTGCGTTCCAACAACACCCTGGTCGGCGGTCTG 
GCCACCCGCATACTGGAAATCTTCAGCAAGGAAGCGCCACGCTGTACCCTGCGCTTCGCCCCGGAATCGGAC 
ATAGACGACGAAGCCCTGCGGCAGAACCGCATCGACCTCTACATCGGCGCCTCGTCCTGGATGGAGCCCGAG 
GTCAAGACCCAGCAACTGCTCACCACCCGCTTCGTCGGCCTGGCCCGCCAGGGGCATCCGATCTTCGACGAC 
GACATCACCCCGCAGCGCTTCGCCGCCTTCCCCCACATCAGCGTCTCGCGCCGCGGACTCCACCACGGCCCG 
CTGGACCAAGCCCTGGGAGAGCTGGGGGTGACCCGCCAGGTCAAGCTGGTCTGCGCAACCTTCCACTCGGCG 
ATCTTCGCCCTGCCCGGTTCCGACCTGCTGCTGCCGATCGCCGAGCACTCCCTGTGGCGGGCCAACCGACTG 
GGCCTGGGCCTGCGCCAGTTCGACATCCCGGTGCCATTGAAGACCGTGATGGTGGTCCAGGCCTGGCATCCA 
CGCTTCGACAACGATCCCGCGCACCGCTGGTTCCGGCAAACGGTCAAGCGGCTTTGCGAGGAAGTGCAGAAC 
GATCCCCATCCGCTGCTGGGCTCCAACTGA