ViewGene
Locus Name:
GeneID:
Location:

GeneID:2477
TrivialName: PA14_31780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31780
PAO1 Ortholog Locus:PA2534
Sequence Length:912
Protein Length:303
Start: 2764521
Stop: 2765432
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05922.1|AE004681_4 (AE004681) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 302/303 (99%), Positives = 302/303 (99%)
Sequence:
ATGGATCGTTTCCAGGCCATGCAGGCCTTCACCCGCATCGTCGAGCTGGGCGCCTTCGGCAAGGCCGCGGAC
AGCCTGGAGCTGCCGCGCGCCAGCGTGACCCAGGCGATCCAGCAACTGGAGGCGCACCTTGGCGTGCAGTTG
CTGCAGCGCACCACCCGCCAGGTCAGCCTGACCCTCGACGGGCAGGCCTACTACGAGCGTTGCGTGCGCCTG
CTGGCGGACCTGGAGGAGGCGGAAAGCTGCTTTCCACGCGTCCTGAACAACCCGCGCGGGCGCTTGCGGGTC
GACCTGCCGGGCGCACTGGGGCGGATGCGGGTGATTCCGTTCCTGCCGGAGTTCTGCGAGCGCTACCCGGAA
CTGGAGCTGCAGTTGAGCAGCAACGATCGCCTGGTCGACCTGCTGCGCGAGGGTGCGGACTGCGTGCTGCGG
GTCGGCGAGCTGCACGATTCCAGCCTGGTCGGCCGGCACCTGGCCGACCTGCCGCAGGTGACCTGCGCCAGC
GCCGCCTACCTGGAGCGTCATGGCCATCCGCGGCAGCTCGCCGAACTCGGCGGGCACCTCGCGGTGAACTAC
CAGTCGCCTTCCAGTGGGCGTACCTTCGACTTCGAGTTCAGCGTCGACGGGCGCCTGCGCACGTTGCCGATG
CGCAGCCGGGTCAGCGTCAACAACGCCGATGCCTACGTCGCCGCCTGCCGGGCCGGGCTCGGGCTGATCCAG
GCGCCGCACTATCACGTCGCCGCCGGCCTGGCCGACGGCAGCCTCCGACAAGTGCTCGGCGAATGGTTGCCG
CCATCGCTGCCGCTGCATGCCGTGTATCCCTCGCAGCGCCAGTTGTCGCCGCGGGTGAGGGTGTTCGTCGAC
TGGCTGGTGGAACTGTTCGGTCGCCAGGCGGCCGGCGAGACGCAATGA
Translation:
MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQAYYERCVRL
LADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELELQLSSNDRLVDLLREGADCVLR
VGELHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLAELGGHLAVNYQSPSSGRTFDFEFSVDGRLRTLPM
RSRVSVNNADAYVAACRAGLGLIQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVD
WLVELFGRQAAGETQ*
AnnotationID:2485GeneID:2477
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:53
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2534
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56252.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 305

 Score =  334 bits (857), Expect = 3e-91
 Identities = 174/293 (59%), Positives = 207/293 (70%)

>gb|AAG21824.1| (AY008288) putative transcriptional regulator CeoR [Burkholderia
           cepacia]
          Length = 334

 Score =  316 bits (810), Expect = 9e-86
 Identities = 164/296 (55%), Positives = 207/296 (69%)

>emb|CAE32954.1| (BX640444) probable LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 306

 Score =  293 bits (751), Expect = 7e-79
 Identities = 149/294 (50%), Positives = 195/294 (66%)










 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  138 bits (348), Expect = 7e-34
Identities = 104/303 (34%), Positives = 145/303 (47%), Gaps = 12/303 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  98.6% aligned
Score =  111 bits (279), Expect = 9e-26
Identities = 73/209 (34%), Positives = 96/209 (45%), Gaps = 6/209 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33088




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2477_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2477
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4153
                           PA2534_tr
                           translation of PA2534
                           303
                           99.66
                           99.66
                           0
                           1550.0
     

     
     
123442
                           gb|AAG05922.1|AE004681_4
                           (AE004681) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.66
                           99.66
                           0
                           1550.0
     

     
     
123443
                           gb|AAO56252.1|
                           (AE016865) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           305
                           57.04
                           68.19
                           2
                           847.0
     

     
     
4154
                           PA2877_tr
                           translation of PA2877
                           303
                           52.47
                           68.31
                           6
                           801.0
     

     
     
123445
                           gb|AAG06265.1|AE004714_2
                           (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           52.47
                           68.31
                           6
                           801.0
     

     






      

          
GC ORFID: 45479How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2534Glimmer Score: 

          
Start: 2189405Stop: 2188494

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2534 translation of PA2534Homolog Bit Score 601.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8132 (ORF: BLASTX 338.0), t_PA2877 (ORF: BLASTX 313.0), t_PA4174 (ORF: BLASTX 256.0), t_PA2534 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGTTTCCAGGCCATGCAGGCCTTCACCCGCATCGTCGAGCTGGGCGCCTTCGGCAAGGCCGCGGAC 
AGCCTGGAGCTGCCGCGCGCCAGCGTGACCCAGGCGATCCAGCAACTGGAGGCGCACCTTGGCGTGCAGTTG 
CTGCAGCGCACCACCCGCCAGGTCAGCCTGACCCTCGACGGGCAGGCCTACTACGAGCGTTGCGTGCGCCTG 
CTGGCGGACCTGGAGGAGGCGGAAAGCTGCTTTCCACGCGTCCTGAACAACCCGCGCGGGCGCTTGCGGGTC 
GACCTGCCGGGCGCACTGGGGCGGATGCGGGTGATTCCGTTCCTGCCGGAGTTCTGCGAGCGCTACCCGGAA 
CTGGAGCTGCAGTTGAGCAGCAACGATCGCCTGGTCGACCTGCTGCGCGAGGGTGCGGACTGCGTGCTGCGG 
GTCGGCGAGCTGCACGATTCCAGCCTGGTCGGCCGGCACCTGGCCGACCTGCCGCAGGTGACCTGCGCCAGC 
GCCGCCTACCTGGAGCGTCATGGCCATCCGCGGCAGCTCGCCGAACTCGGCGGGCACCTCGCGGTGAACTAC 
CAGTCGCCTTCCAGTGGGCGTACCTTCGACTTCGAGTTCAGCGTCGACGGGCGCCTGCGCACGTTGCCGATG 
CGCAGCCGGGTCAGCGTCAACAACGCCGATGCCTACGTCGCCGCCTGCCGGGCCGGGCTCGGGCTGATCCAG 
GCGCCGCACTATCACGTCGCCGCCGGCCTGGCCGACGGCAGCCTCCGACAAGTGCTCGGCGAATGGTTGCCG 
CCATCGCTGCCGCTGCATGCCGTGTATCCCTCGCAGCGCCAGTTGTCGCCGCGGGTGAGGGTGTTCGTCGAC 
TGGCTGGTGGAACTGTTCGGTCGCCAGGCGGCCGGCGAGACGCAATGA