ViewGene
Locus Name:
GeneID:
Location:

GeneID:2476
TrivialName: PA14_34930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34930
PAO1 Ortholog Locus:PA2293
Sequence Length:966
Protein Length:321
Start: 3108760
Stop: 3109725
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05681.1|AE004655_3 (AE004655) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/321 (97%), Positives = 317/321 (98%)
Sequence:
ATGACCTGTGAAAACGCCACCCTGCCCGAAATCCTCGAACTGTCGCCGCGCCTGGAGGACGCCGATCCCGGC
GTGCGTCGCCTGGCGCTGATCGAACTGGCCGACCTGGAGCTGCCGGAGGCGCTGCCGTTGCTGGTTGCGGCC
CTGCGCGGCGATCCCGACCCCGGCGTGCGCGGCGAGGCCGCGCGCCTGCTGGAGGCCTGGGAGGAAGACGCA
GTGGTCGATGCGCTTTGCGCGGCCCTGGCCGATCCGCTGCCGGCGGTGGCCGAGGCCGCCGCGCAGAGCCTT
GGCGAACTCAAGGAACCGGCCGCCGGGCGGCGCCTGCTGCCGTGGCTCGAGCATGCCGATGCCTTCGTCCGT
GCCAGCGTATTGCGTGCGTTGCGCGAACTGCGCCTGGAGGAAAGCGCCGCACCGGCCCTGGCCGCCCTCGGT
GACCCGCAGGCGGCGGTGCGCCGCGAGGCGGTGGCGGTGCTCGGCTGGCTCCGCCACCAGCCGGCCCTGGCC
GAACTGGCCAGGCTGGCTAGCGCCGATGTCGACCCGGAGGTACGCCGGGCGGCCACCGGCGCCCTCGGCCTG
AGCCGCGAGGTGACGGTGCTGCCGGCGCTCTGCGCGGCGCTGGCGGACGCTCAATGGCAGGTTCGCGAAGAG
GCGGCGACGACCCTTGGCAAGCTGGGCCGGGAGGAGGCCGGCGAGCCGCTGCTGAAGGCCCTGGCGGACGAC
TACTGGCAGGTCCGCCTGCGCGCCGCGCGGTCGCTCGGGCGCTTGCGCCACCGCCCGGCGCGGGAGGCGCTG
GAAGCATTGCTCGGCCATCCCATCGGCAACCTGCGCAAGGAGGCCGCCCTGGCCCTCGGCGAACTGGCGGAC
CCGGCCTCGGCCCAGgcCTTGCGGGTCGCCGAAGGCGACGGCGATCCCGAGGTGCGCAAGGCGGTGCGCATC
GCCCTGGGGCAACTGCGGGTGCCGGCATGA
Translation:
MTCENATLPEILELSPRLEDADPGVRRLALIELADLELPEALPLLVAALRGDPDPGVRGEAARLLEAWEEDA
VVDALCAALADPLPAVAEAAAQSLGELKEPAAGRRLLPWLEHADAFVRASVLRALRELRLEESAAPALAALG
DPQAAVRREAVAVLGWLRHQPALAELARLASADVDPEVRRAATGALGLSREVTVLPALCAALADAQWQVREE
AATTLGKLGREEAGEPLLKALADDYWQVRLRAARSLGRLRHRPAREALEALLGHPIGNLRKEAALALGELAD
PASAQALRVAEGDGDPEVRKAVRIALGQLRVPA*
AnnotationID:2484GeneID:2476
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:55
Gene Name:
Confidence Code:3
GeneProduct:putative phycobiliprotein
Cell Localization:()
Synonyms:PA2293
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1413
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65843.1|AE016212_9 (AE016774) phycobiliprotein, putative [Pseudomonas putida KT2440]
          Length = 321

 Score =  390 bits (1001), Expect = e-108
 Identities = 213/318 (66%), Positives = 240/318 (75%)








 
Structural Features:
COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]
CD-Length = 335 residues,  99.1% aligned
Score = 99.2 bits (246), Expect = 5e-22
Identities = 116/333 (34%), Positives = 152/333 (45%), Gaps = 16/333 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4955




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32494




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2476_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2476
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4152
                           PA2293_tr
                           translation of PA2293
                           321
                           97.19
                           98.75
                           0
                           1550.0
     

     
     
123438
                           gb|AAG05681.1|AE004655_3
                           (AE004655) hypothetical protein PA2293 [Pseudomonas aeruginosa PAO1]
                           321
                           97.19
                           98.75
                           0
                           1550.0
     

     
     
123439
                           gb|AAN65843.1|AE016212_9
                           (AE016774) phycobiliprotein, putative [Pseudomonas putida KT2440]
                           321
                           66.66
                           75.07
                           0
                           1001.0
     

     
     
123441
                           dbj|BAB54583.1|
                           (AP003015) hypothetical protein [Mesorhizobium loti]
                           323
                           40.86
                           56.34
                           7
                           539.0
     

     
     
123440
                           dbj|BAC48463.1|
                           (AP005946) blr3198 [Bradyrhizobium japonicum USDA 110]
                           329
                           40.72
                           55.01
                           10
                           551.0
     

     






      

          
GC ORFID: 45478How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2293Glimmer Score: 

          
Start: 1845156Stop: 1844191

          
Length: 966


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2293 translation of PA2293Homolog Bit Score 601.0

          
Other Homologs:  t_PA2293 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTGTGAAAACGCCACCCTGCCCGAAATCCTCGAACTGTCGCCGCGCCTGGAGGACGCCGATCCCGGC 
GTGCGTCGCCTGGCGCTGATCGAACTGGCCGACCTGGAGCTGCCGGAGGCGCTGCCGTTGCTGGTTGCGGCC 
CTGCGCGGCGATCCCGACCCCGGCGTGCGCGGCGAGGCCGCGCGCCTGCTGGAGGCCTGGGAGGAAGACGCA 
GTGGTCGATGCGCTTTGCGCGGCCCTGGCCGATCCGCTGCCGGCGGTGGCCGAGGCCGCCGCGCAGAGCCTT 
GGCGAACTCAAGGAACCGGCCGCCGGGCGGCGCCTGCTGCCGTGGCTCGAGCATGCCGATGCCTTCGTCCGT 
GCCAGCGTATTGCGTGCGTTGCGCGAACTGCGCCTGGAGGAAAGCGCCGCACCGGCCCTGGCCGCCCTCGGT 
GACCCGCAGGCGGCGGTGCGCCGCGAGGCGGTGGCGGTGCTCGGCTGGCTCCGCCACCAGCCGGCCCTGGCC 
GAACTGGCCAGGCTGGCTAGCGCCGATGTCGACCCGGAGGTACGCCGGGCGGCCACCGGCGCCCTCGGCCTG 
AGCCGCGAGGTGACGGTGCTGCCGGCGCTCTGCGCGGCGCTGGCGGACGCTCAATGGCAGGTTCGCGAAGAG 
GCGGCGACGACCCTTGGCAAGCTGGGCCGGGAGGAGGCCGGCGAGCCGCTGCTGAAGGCCCTGGCGGACGAC 
TACTGGCAGGTCCGCCTGCGCGCCGCGCGGTCGCTCGGGCGCTTGCGCCACCGCCCGGCGCGGGAGGCGCTG 
GAAGCATTGCTCGGCCATCCCATCGGCAACCTGCGCAAGGAGGCCGCCCTGGCCCTCGGCGAACTGGCGGAC 
CCGGCCTCGGCCCAGgcCTTGCGGGTCGCCGAAGGCGACGGCGATCCCGAGGTGCGCAAGGCGGTGCGCATC 
GCCCTGGGGCAACTGCGGGTGCCGGCATGA