ViewGene
Locus Name:
GeneID:
Location:

GeneID:2475
TrivialName: PA14_46330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46330
PAO1 Ortholog Locus:PA1399
Sequence Length:921
Protein Length:306
Start: 4123314
Stop: 4124234
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04788.1|AE004569_6 (AE004569) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/306 (98%), Positives = 302/306 (98%)
Sequence:
ATGAATCAGCCACATGAATGGTCGCCCCTCAGCCGTTTCGATCTGAACCTGTTCCGGGTCTTCGAAGTGGTC
TATCGAGAACGCAACCTGACCCGCGCGGCGGGCCTCCTGCATCTCAGCCAGTCGGCCGTCAGCCACGCCCTG
GCGCGCCTGCGCGACCAGCTCGGCGACCCGCTGTTCGTTCGCCAGGGGCGCGGGGTTGCGCCGACGCCGCTG
GCCGATCGACTGGCGCCGGGCATCCATGACGCCCTCGCCGGCCTGCACCGCAGCATGAATCGCTGCCAGACA
TTCGACCCTCGGCGCGACGCGCGGACCTTCCAGTTGAACATGCCGGAGCAACTGGAGCCGCTGGTGCTCCCG
GCGATCCTCGACCACCTGCGCCAGGCCGCGCCGCGCATCGAGATACGCTGCAACAGCCTGCACTGGGCGGAC
CTGAAGGCGGAACTGGGCGCCGGACGCATCGACCTCGCCATCGAGATCGCCCGGCCCACCGACGCCGCCCTG
CGCCGCCAGCACCTGCTCGACGACAGCCTGTGCGTGATGGCCGGGCCGGGCTTCGCCGGCGACCTGAGTGCG
GAGGAGTACCTGGCGGCGGACCATGTCGCGGTGACCTCGCGGCGACGCGGCATCTGCATCGAAGACCTGGCC
CTCGGCCACCTCGGCCTGACCCGCCAGGTGCGCCAGCGCTGCCAGCACTACCTGTCGGCGGCGTTGCTGGTG
GCCCAGGGCAGCTACCTGCTGACCCTGACCCGAGGCTACGCCGAACTGATCAACCGCGGCCTGGGCAACCGC
CTGCTGCCGATGCCGCTGGCCCTGCCAGCGGTGACTCTGAATCTCTACTGGTCGCGCCAGGCCGACGACGAA
GCCGGCAGCCTCTGGCTGCGCGGCGAACTGGCGGAGTTGGCGACGCGCCTGCGCTGA
Translation:
MNQPHEWSPLSRFDLNLFRVFEVVYRERNLTRAAGLLHLSQSAVSHALARLRDQLGDPLFVRQGRGVAPTPL
ADRLAPGIHDALAGLHRSMNRCQTFDPRRDARTFQLNMPEQLEPLVLPAILDHLRQAAPRIEIRCNSLHWAD
LKAELGAGRIDLAIEIARPTDAALRRQHLLDDSLCVMAGPGFAGDLSAEEYLAADHVAVTSRRRGICIEDLA
LGHLGLTRQVRQRCQHYLSAALLVAQGSYLLTLTRGYAELINRGLGNRLLPMPLALPAVTLNLYWSRQADDE
AGSLWLRGELAELATRLR*
AnnotationID:2483GeneID:2475
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:01
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1399
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15720.1| (AL646067) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 321

 Score =  231 bits (590), Expect = 3e-60
 Identities = 128/289 (44%), Positives = 173/289 (59%), Gaps = 3/289 (1%)

>gb|AAN68048.1|AE016437_5 (AE016783) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  198 bits (503), Expect = 4e-50
 Identities = 109/299 (36%), Positives = 173/299 (57%), Gaps = 7/299 (2%)

>gb|AAO56245.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 309

 Score =  189 bits (481), Expect = 1e-47
 Identities = 107/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.3% aligned
Score =  110 bits (275), Expect = 2e-25
Identities = 77/297 (25%), Positives = 103/297 (34%), Gaps = 5/297 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4953




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37411




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2475_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2475
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4151
                           PA1399_tr
                           translation of PA1399
                           306
                           98.36
                           98.69
                           0
                           1550.0
     

     
     
123436
                           gb|AAG04788.1|AE004569_6
                           (AE004569) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           98.36
                           98.69
                           0
                           1550.0
     

     
     
123437
                           emb|CAD15720.1|
                           (AL646067) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           325
                           40.92
                           55.38
                           23
                           587.0
     

     






      

          
GC ORFID: 45477How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1399Glimmer Score: 

          
Start: 830595Stop: 829675

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1399 translation of PA1399Homolog Bit Score 601.0

          
Other Homologs:  t_PA1399 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCAGCCACATGAATGGTCGCCCCTCAGCCGTTTCGATCTGAACCTGTTCCGGGTCTTCGAAGTGGTC 
TATCGAGAACGCAACCTGACCCGCGCGGCGGGCCTCCTGCATCTCAGCCAGTCGGCCGTCAGCCACGCCCTG 
GCGCGCCTGCGCGACCAGCTCGGCGACCCGCTGTTCGTTCGCCAGGGGCGCGGGGTTGCGCCGACGCCGCTG 
GCCGATCGACTGGCGCCGGGCATCCATGACGCCCTCGCCGGCCTGCACCGCAGCATGAATCGCTGCCAGACA 
TTCGACCCTCGGCGCGACGCGCGGACCTTCCAGTTGAACATGCCGGAGCAACTGGAGCCGCTGGTGCTCCCG 
GCGATCCTCGACCACCTGCGCCAGGCCGCGCCGCGCATCGAGATACGCTGCAACAGCCTGCACTGGGCGGAC 
CTGAAGGCGGAACTGGGCGCCGGACGCATCGACCTCGCCATCGAGATCGCCCGGCCCACCGACGCCGCCCTG 
CGCCGCCAGCACCTGCTCGACGACAGCCTGTGCGTGATGGCCGGGCCGGGCTTCGCCGGCGACCTGAGTGCG 
GAGGAGTACCTGGCGGCGGACCATGTCGCGGTGACCTCGCGGCGACGCGGCATCTGCATCGAAGACCTGGCC 
CTCGGCCACCTCGGCCTGACCCGCCAGGTGCGCCAGCGCTGCCAGCACTACCTGTCGGCGGCGTTGCTGGTG 
GCCCAGGGCAGCTACCTGCTGACCCTGACCCGAGGCTACGCCGAACTGATCAACCGCGGCCTGGGCAACCGC 
CTGCTGCCGATGCCGCTGGCCCTGCCAGCGGTGACTCTGAATCTCTACTGGTCGCGCCAGGCCGACGACGAA 
GCCGGCAGCCTCTGGCTGCGCGGCGAACTGGCGGAGTTGGCGACGCGCCTGCGCTGA