ViewGene
Locus Name:
GeneID:
Location:

GeneID:2474
TrivialName: PA14_50600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50600
PAO1 Ortholog Locus:PA1067
Sequence Length:915
Protein Length:304
Start: 4497304
Stop: 4496390
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04456.1|AE004538_8 (AE004538) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
GTGAAGGACCTGGACGATCTCGCCGCCTTCGCCGTACTCCACGACCTGGGCAGTTTCACCCGCGCCGCCGAG
CGCCTCGGTTGCAGCAAGGGCCAACTGTCGAAGCGCATTGGCGTCCTCGAGCAGAAGCTCGGCGTAACCCTC
TTGCACCGCACCACCCGCCGTCTTTCGCTGACCGCCGCCGGCGCCGCGCTGCTGCCCGAGGCGCAGGCGTTG
CTGGTGCAGGCCGAGCGCGCGCGGCAGGCGGTGGCGCGCTTGCAGGAGCGAGCGGAAGGACGGGTGCGGGTG
ACCCTCCCGGTCTCGCTGGGCGAGACCCTGTTCGACGCGCTGCTGGAGGACTTCCAGGAACGCCATCCGCTG
CTGCGCGTCGAGCTGGACCTGTACAACGGCCTGCGCGACCTGGTTGGCGAGGGCTTCGACCTGGCGATCCGC
TCTGGGGTCGAGCAGGACGCCCGGCTGGTGGCGCGGCCGCTGTTCGTCCTGCAGGAAATCACCTGCGCCAGT
CCCGCCTACCTGGCGCGACATGGCGAGCCGCAACGCCCGGCCGAGCTGGCCGAGCGCGAGTGCCTGCTGAAC
TCGCACTACAGCGGCCACGAGGAGTGGCTCTATCACCGCCACCATCGGCTGGAGCGGGTACGGGTTGCCGGC
TTTCTCGCCAGCAACCACTACAGCCTGTTGAAGAAAGCCGCGCTGGCCGGCACCGGCATCGCCCGGCTGCCG
TCATACATGGTCCACGACGAACTGGGCGACGGCCGCCTGGCCTGGTTGCTGCGCGACTACCAGACGCGCAGC
ACGCCGATGTTCCTCGTCCATCCGTTCCAGGGCGGCCTGCCGCGGCGCACCCAGGTGCTCGCCGATTACCTG
CTCGACTGGTTCGAGCGCAGCCGGCGACAATTGATCGGCCTGGAGGGTTGA
Translation:
MKDLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAGAALLPEAQAL
LVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLRVELDLYNGLRDLVGEGFDLAIR
SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRPAELAERECLLNSHYSGHEEWLYHRHHRLERVRVAG
FLASNHYSLLKKAALAGTGIARLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHPFQGGLPRRTQVLADYL
LDWFERSRRQLIGLEG*
AnnotationID:2482GeneID:2474
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:53
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA1067
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
       CD-Length = 297 residues,  99.7% aligned
       Score =  132 bits (333), Expect = 5e-32






   
Genomic Context:






   
Comment:


















    ReferenceID:14601




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2474
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4150
                           PA1067_tr
                           translation of PA1067
                           304
                           99.99
                           99.99
                           0
                           1550.0
     

     
     
123432
                           gb|AAG04456.1|AE004538_8
                           (AE004538) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           304
                           99.67
                           99.99
                           0
                           1547.0
     

     
     
123433
                           gb|AAQ58417.1|
                           (AE016912) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472]
                           314
                           38.53
                           55.73
                           24
                           527.0
     

     
     
123434
                           gb|AAQ59687.1|
                           (AE016917) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           361
                           31.02
                           41.55
                           74
                           362.0
     

     
     
123435
                           gb|AAQ57977.2|
                           (AE016910) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           304
                           27.63
                           36.51
                           103
                           350.0
     

     






      

          
GC ORFID: 45476How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1067Glimmer Score: 

          
Start: 456604Stop: 457518

          
Length: 915


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1067 translation of PA1067Homolog Bit Score 601.0

          
Other Homologs:  t_PA1067 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGGACCTGGACGATCTCGCCGCCTTCGCCGTACTCCACGACCTGGGCAGTTTCACCCGCGCCGCCGAG 
CGCCTCGGTTGCAGCAAGGGCCAACTGTCGAAGCGCATTGGCGTCCTCGAGCAGAAGCTCGGCGTAACCCTC 
TTGCACCGCACCACCCGCCGTCTTTCGCTGACCGCCGCCGGCGCCGCGCTGCTGCCCGAGGCGCAGGCGTTG 
CTGGTGCAGGCCGAGCGCGCGCGGCAGGCGGTGGCGCGCTTGCAGGAGCGAGCGGAAGGACGGGTGCGGGTG 
ACCCTCCCGGTCTCGCTGGGCGAGACCCTGTTCGACGCGCTGCTGGAGGACTTCCAGGAACGCCATCCGCTG 
CTGCGCGTCGAGCTGGACCTGTACAACGGCCTGCGCGACCTGGTTGGCGAGGGCTTCGACCTGGCGATCCGC 
TCTGGGGTCGAGCAGGACGCCCGGCTGGTGGCGCGGCCGCTGTTCGTCCTGCAGGAAATCACCTGCGCCAGT 
CCCGCCTACCTGGCGCGACATGGCGAGCCGCAACGCCCGGCCGAGCTGGCCGAGCGCGAGTGCCTGCTGAAC 
TCGCACTACAGCGGCCACGAGGAGTGGCTCTATCACCGCCACCATCGGCTGGAGCGGGTACGGGTTGCCGGC 
TTTCTCGCCAGCAACCACTACAGCCTGTTGAAGAAAGCCGCGCTGGCCGGCACCGGCATCGCCCGGCTGCCG 
TCATACATGGTCCACGACGAACTGGGCGACGGCCGCCTGGCCTGGTTGCTGCGCGACTACCAGACGCGCAGC 
ACGCCGATGTTCCTCGTCCATCCGTTCCAGGGCGGCCTGCCGCGGCGCACCCAGGTGCTCGCCGATTACCTG 
CTCGACTGGTTCGAGCGCAGCCGGCGACAATTGATCGGCCTGGAGGGTTGA