ViewGene
Locus Name:
GeneID:
Location:

GeneID:2473
TrivialName: PA14_55470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55470
PAO1 Ortholog Locus:
Sequence Length:1143
Protein Length:380
Start: 4939074
Stop: 4937932
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04072.1|AE004503_10 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 300/309 (97%), Positives = 301/309 (97%)
Sequence:
CTGCGCCTGGATGCGCGCGGCGCGGTGCAGGAACGAATCGAGGCCTCGCTCGCGGAACTGGCGCGGCGACGC
CAGGGGTTGCCGGTGGCGCTGTTCCTGCATCCGCGCGATTGCCGCCTGGTCAGTCTCGAACTGCCGGCGCTG
CCTGCGGCGAAGCTCGCCGCCGCGGTGAACTGCGCGGCCGAGGCGCTGGTCCTCGGCGATCCGGCGCAGCTA
CGCCTGGCCCACGGCCCGCGCGGCGCCGACGGGCGCCTGACCTTGGGGTGGCTGGAGGCGTCGGCGCTGGCC
TCGCTGGAGCAGGCCGTGCAGCGGCTGCGGCTCGACGTGCGGGAGGTGCAGGCCGCGCCGTTCCTCCTGCCG
TTGCGCGATGACGCTTGGGTGGCCGGCGAGTGGGACGGCCATCTGCTGTTGCGCCGCTCGCTGAGCGACGCT
GCGGTCCATCCCTTGCCGGAGCAGGGCCTCGCTGAGGTCCCGCAGGAGTTGCGACTGTTCTGGCTGGGCGAG
CGACCGGCGTGGGGCTCCGCAGCCCTGGAGCGGGCCGAGGCGCTGGACGAAGCGCTGCGCTGGAGCGGGCCC
GCCAGTCCGTGGGGATTGGCGCTGAAAGCGCCGGCGACGAGCGCCGGCAACGGCACCTGGAAGATGCCCCTG
GTCTGCGCAGCCCTGGCCTTGCTGGTGTGGGTCGCCGGCCTGAACCTGTACGCCGGGCAACTGGCCGGGCAG
GGCCAGTCCTTGCAACGGCAGAGCAGTCAACGCGTGCAGCAGGCCTTCCCGGAACTGCCGGTGGTGCTCGAT
CCGTTGCGCCAGGCTCGCGAGCGACGCGACGCCTATCTGGCCGGCAAGGCCGATGGCGATGCCGTACCGGGG
CTGGCCGCGCTGCTGCATGGCGCCGGCGAGGCGATGCCGTTCCTCGCCGGACGCCTGCAACGACTGGACTAC
CACGCCGGCGAACTGGACCTGGAGCTGCTGCCGGGACCGCCAGGCGGCGATGCCGCTGCCTGGCAGGGCGAG
TTGGGCAAGCACGGGTTGCAGGCCGATGCCTCCGACAAGGGCTGGCAGGTGCGCGCCATGGAAGCGCCGCCA
GCGCCGGCCGCTGGCGCGGCAGGCAGTGGCACTGCCGAGGCGGCTGCCGATGAAGATGAATAA
Translation:
MRLDARGAVQERIEASLAELARRRQGLPVALFLHPRDCRLVSLELPALPAAKLAAAVNCAAEALVLGDPAQL
RLAHGPRGADGRLTLGWLEASALASLEQAVQRLRLDVREVQAAPFLLPLRDDAWVAGEWDGHLLLRRSLSDA
AVHPLPEQGLAEVPQELRLFWLGERPAWGSAALERAEALDEALRWSGPASPWGLALKAPATSAGNGTWKMPL
VCAALALLVWVAGLNLYAGQLAGQGQSLQRQSSQRVQQAFPELPVVLDPLRQARERRDAYLAGKADGDAVPG
LAALLHGAGEAMPFLAGRLQRLDYHAGELDLELLPGPPGGDAAAWQGELGKHGLQADASDKGWQVRAMEAPP
APAAGAAGSGTAEAAADEDE*
AnnotationID:2481GeneID:2473
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 12:12:54
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:hxcY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
identity to PA0683 is 79.15% (along entire length).  Neighboring ORFs all >95% identical
to PAO1 counterparts.






 
Structural Features:






   
Genomic Context:






   
Comment:
Confirmed frame shift in 5' end of ORF results in failure to align in first 73 amino acids of PAO1 PA0683.


















    ReferenceID:14599




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2473
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4149
                           PA0683_tr
                           translation of PA0683
                           403
                           79.15
                           79.90
                           45
                           1537.0
     

     
     
123431
                           gb|AAG04072.1|AE004503_10
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           404
                           78.21
                           78.96
                           47
                           1536.0
     

     






      

          
GC ORFID: 45475How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0683Glimmer Score: 

          
Start: 14833Stop: 15975

          
Length: 1143


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0683 translation of PA0683Homolog Bit Score 601.0

          
Other Homologs:  t_PA0683 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCGCCTGGATGCGCGCGGCGCGGTGCAGGAACGAATCGAGGCCTCGCTCGCGGAACTGGCGCGGCGACGC 
CAGGGGTTGCCGGTGGCGCTGTTCCTGCATCCGCGCGATTGCCGCCTGGTCAGTCTCGAACTGCCGGCGCTG 
CCTGCGGCGAAGCTCGCCGCCGCGGTGAACTGCGCGGCCGAGGCGCTGGTCCTCGGCGATCCGGCGCAGCTA 
CGCCTGGCCCACGGCCCGCGCGGCGCCGACGGGCGCCTGACCTTGGGGTGGCTGGAGGCGTCGGCGCTGGCC 
TCGCTGGAGCAGGCCGTGCAGCGGCTGCGGCTCGACGTGCGGGAGGTGCAGGCCGCGCCGTTCCTCCTGCCG 
TTGCGCGATGACGCTTGGGTGGCCGGCGAGTGGGACGGCCATCTGCTGTTGCGCCGCTCGCTGAGCGACGCT 
GCGGTCCATCCCTTGCCGGAGCAGGGCCTCGCTGAGGTCCCGCAGGAGTTGCGACTGTTCTGGCTGGGCGAG 
CGACCGGCGTGGGGCTCCGCAGCCCTGGAGCGGGCCGAGGCGCTGGACGAAGCGCTGCGCTGGAGCGGGCCC 
GCCAGTCCGTGGGGATTGGCGCTGAAAGCGCCGGCGACGAGCGCCGGCAACGGCACCTGGAAGATGCCCCTG 
GTCTGCGCAGCCCTGGCCTTGCTGGTGTGGGTCGCCGGCCTGAACCTGTACGCCGGGCAACTGGCCGGGCAG 
GGCCAGTCCTTGCAACGGCAGAGCAGTCAACGCGTGCAGCAGGCCTTCCCGGAACTGCCGGTGGTGCTCGAT 
CCGTTGCGCCAGGCTCGCGAGCGACGCGACGCCTATCTGGCCGGCAAGGCCGATGGCGATGCCGTACCGGGG 
CTGGCCGCGCTGCTGCATGGCGCCGGCGAGGCGATGCCGTTCCTCGCCGGACGCCTGCAACGACTGGACTAC 
CACGCCGGCGAACTGGACCTGGAGCTGCTGCCGGGACCGCCAGGCGGCGATGCCGCTGCCTGGCAGGGCGAG 
TTGGGCAAGCACGGGTTGCAGGCCGATGCCTCCGACAAGGGCTGGCAGGTGCGCGCCATGGAAGCGCCGCCA 
GCGCCGGCCGCTGGCGCGGCAGGCAGTGGCACTGCCGAGGCGGCTGCCGATGAAGATGAATAA