ViewGene

Locus Name:
GeneID:
Location:

GeneID:2472
TrivialName: PA14_02420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02420
PAO1 Ortholog Locus:PA0193
Sequence Length:903
Protein Length:300
Start: 218321
Stop: 219223
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03583.1|AE004457_4 (AE004457) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/300 (99%), Positives = 300/300 (100%)
Sequence:
ATGAGCAATGCAGCACAAGCCCTCGCCACGCCGGTACGGCTCGACGTCCGGCCGGTCGCCGGACGGATCGGC
GCGGAGATTCGCGGCGTGACCCTGTCCGGCGAACTGGACGCCGCCACCGTCGAGGCGATCCAGGCCGCCCTG
GTACGCCACAAGGTGATCTTCTTCCGGGACCAGAGCCATCTCGACGACCAGACCCAGGAGGCCTTCGCCCAC
TTGCTCGGCGAACCGGTCGCCCACCCCACAGTGCCGTCCCGCGAAGGCACCCGCTTCCTCCTCGAGCTGGAT
GGCGCCGAAGGCCGCCGGGCCAACTCCTGGCATACCGACGTGACCTTCGTCGAGGCCTACCCGAAGGCCTCG
ATCCTGCGCAGCGTGGTGGCCCCGGAGTCCGGCGGCGACACCGTCTGGGCCAACACGGCGAGCGCCTACGCC
GACCTGCCGGCGGAGCTGCGCGAGCTGGCCGACCGGCTCTGGGCGGTGCACAGCAACGAGTACGACTACGCC
GGGGTCAAGCCCAGCGCCTCGCTGGAGCAGTTGGAGAACTACCGCAAGGTGTTCACCTCGACCGTCTACGAG
ACCGAGCACCCGGTGGTCCGCGTGCATCCGCAAAGCGGCGAGCGGACGCTGCTCCTTGGCCACTTCGTGAAA
CGCCTGAAGGGTCTTTCGCAGCATGACTCGGCGCACCTCTTCGCGGTGCTGCAGGGGCACGTCACGCGCCTG
GAGAACACCGTGCGCTGGCGCTGGCAGGCCGGCGACGTGGCGATCTGGGACAACCGCGCGACCCAGCACTAC
GCGATCGACGACTACGGCGACCAGCCGCGCGTAGTGCGCCGGGTGACCCTCGGCGGCGACGTGCCGGTAGGC
ATCGACGGGCAACGCAGCCGGACGATCCGGAAGGCATGA
Translation:
MSNAAQALATPVRLDVRPVAGRIGAEIRGVTLSGELDAATVEAIQAALVRHKVIFFRDQSHLDDQTQEAFAH
LLGEPVAHPTVPSREGTRFLLELDGAEGRRANSWHTDVTFVEAYPKASILRSVVAPESGGDTVWANTASAYA
DLPAELRELADRLWAVHSNEYDYAGVKPSASLEQLENYRKVFTSTVYETEHPVVRVHPQSGERTLLLGHFVK
RLKGLSQHDSAHLFAVLQGHVTRLENTVRWRWQAGDVAIWDNRATQHYAIDDYGDQPRVVRRVTLGGDVPVG
IDGQRSRTIRKA*
AnnotationID:2480GeneID:2472
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:41
Gene Name:
Confidence Code:3
GeneProduct:putative alkylsulfatase
Cell Localization:()
Synonyms:atsK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative taurine catabolism dioxygenase
Functional Category Confidence Code:5
COGs:COG2175,pfam02668
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAD31784.1|AF126201_2 (AF126201) putative alkylsulfatase [Pseudomonas putida]
          Length = 301

 Score =  489 bits (1259), Expect = e-138
 Identities = 243/300 (81%), Positives = 264/300 (88%), Gaps = 1/300 (0%)

>dbj|BAC73127.1| (AP005042) putative alkylsulfatase [Streptomyces avermitilis
           MA-4680]
          Length = 299

 Score =  270 bits (690), Expect = 8e-72
 Identities = 145/285 (50%), Positives = 184/285 (64%), Gaps = 4/285 (1%)

Structural Features:
COG2175, TauD, Probable taurine catabolism dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 286 residues,  99.7% aligned
Score =  283 bits (726), Expect = 1e-77
Identities = 135/286 (47%), Positives = 172/286 (60%), Gaps = 6/286 (2%)

pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
CD-Length = 282 residues,  98.6% aligned
Score =  214 bits (546), Expect = 1e-56
Identities = 104/281 (37%), Positives = 146/281 (51%), Gaps = 10/281 (3%)
Genomic Context:
Comment:
ReferenceID:4947
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22093
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33561
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2472_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2472

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4147 PA0193_tr translation of PA0193 300 99.33 99.99 0 1549.0
123420 gb|AAG03583.1|AE004457_4 (AE004457) hypothetical protein PA0193 [Pseudomonas aeruginosa PAO1] 300 99.33 99.99 0 1549.0
123421 gb|AAD31784.1|AF126201_2 (AF126201) putative alkylsulfatase [Pseudomonas putida] 301 80.73 87.70 1 1261.0
123422 dbj|BAC47390.1| (AP005942) bll2125 [Bradyrhizobium japonicum USDA 110] 308 54.54 68.18 11 839.0
123424 emb|CAD95627.1| (BX248346) PROBABLE DIOXYGENASE [Mycobacterium bovis subsp. bovis AF2122/97] 306 50.98 63.72 17 786.0
GC ORFID: 45474How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0193Glimmer Score:
Start: 6019660Stop: 6020562
Length: 903
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0193 translation of PA0193Homolog Bit Score 601.0
Other Homologs: t_PA3935 (ORF: BLASTX 187.0), t_PA0193 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAATGCAGCACAAGCCCTCGCCACGCCGGTACGGCTCGACGTCCGGCCGGTCGCCGGACGGATCGGC
GCGGAGATTCGCGGCGTGACCCTGTCCGGCGAACTGGACGCCGCCACCGTCGAGGCGATCCAGGCCGCCCTG
GTACGCCACAAGGTGATCTTCTTCCGGGACCAGAGCCATCTCGACGACCAGACCCAGGAGGCCTTCGCCCAC
TTGCTCGGCGAACCGGTCGCCCACCCCACAGTGCCGTCCCGCGAAGGCACCCGCTTCCTCCTCGAGCTGGAT
GGCGCCGAAGGCCGCCGGGCCAACTCCTGGCATACCGACGTGACCTTCGTCGAGGCCTACCCGAAGGCCTCG
ATCCTGCGCAGCGTGGTGGCCCCGGAGTCCGGCGGCGACACCGTCTGGGCCAACACGGCGAGCGCCTACGCC
GACCTGCCGGCGGAGCTGCGCGAGCTGGCCGACCGGCTCTGGGCGGTGCACAGCAACGAGTACGACTACGCC
GGGGTCAAGCCCAGCGCCTCGCTGGAGCAGTTGGAGAACTACCGCAAGGTGTTCACCTCGACCGTCTACGAG
ACCGAGCACCCGGTGGTCCGCGTGCATCCGCAAAGCGGCGAGCGGACGCTGCTCCTTGGCCACTTCGTGAAA
CGCCTGAAGGGTCTTTCGCAGCATGACTCGGCGCACCTCTTCGCGGTGCTGCAGGGGCACGTCACGCGCCTG
GAGAACACCGTGCGCTGGCGCTGGCAGGCCGGCGACGTGGCGATCTGGGACAACCGCGCGACCCAGCACTAC
GCGATCGACGACTACGGCGACCAGCCGCGCGTAGTGCGCCGGGTGACCCTCGGCGGCGACGTGCCGGTAGGC
ATCGACGGGCAACGCAGCCGGACGATCCGGAAGGCATGA