ViewGene
Locus Name:
GeneID:
Location:

GeneID:2470
TrivialName: PA14_69590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69590
PAO1 Ortholog Locus:PA5270
Sequence Length:882
Protein Length:293
Start: 6208279
Stop: 6209160
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08655.1|AE004939_7 (AE004939) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/293 (99%), Positives = 292/293 (99%)
Sequence:
GTGCCGGCGAATGCCCCTCGTATCCATACGGTTTTGTTTCGCCAAACGCCTGCCGCTCTGGTAGAAAGGTGG
CGCCCACTCTCCGTGCCACCTGCTTTCGCGGAGCGATACCGGATGCGATCCTGGTTCCACTTCCTGCCCATC
TGCCTGCTGCTGGCCCTTTCCGGCCCGGCAGCGGCCGTCCCGACAGAACCCCTGGTGCTCGGCGCCGAAGAC
GACTGGTATCCCTATACCGCCTACAAGGaCGGCCGCATCCAGGGCATGAGCGCGGACATCGTGCGGGCCGCC
TTCAGGGCTGCGGACACGCCGGTCCAGCTCAATCCCTACCCCTACTCCCGCTGCATGAAGCTGGCCCTGAAA
GGCTTGATCGCCGGCTGCTTCAACACCTCGCCGAACCCGCACATCCTCGCCGACTACCGTCTGCCCCGGCAT
CCGTTGTTCCGCGCGGAGATCCAGCTCTGGGCGCGACGCGACGAAGCGCGGCCGGTGAATGCGGAGCAGGCG
CTGAGCGGACGGAAAGTCGCGGTGACCCTCGGCTATGAATACGGCGACGGCTTCGATCGCCGCCACGACCTG
GTGCGCATTCCGGTGCGCAAGGACTACTACGGTTTCCTCATGCTCCAGCGCGGCCGCGTCGACTACGCCCTG
GCCTACCGCAATACGGCTCGCCAGTTGTTCAGCGAACATCCCGAACTGGAAGGCCAGTTCCAGCCGGTGGCC
ACGGTCCACCGCCCGGAGCTGTACCTGTCGTTCTCGCGCCGCCACCCGCAGGCCGAGCATCTGCTCGAACGC
TTCGACCTCGGCATGCAGCGCATCCTCGCCAGCGGCGAGTACCAGAAGATCCTCGACGGCTGGAGCCAGGCC
GCCGACGCTACGCCCTAG
Translation:
MPANAPRIHTVLFRQTPAALVERWRPLSVPPAFAERYRMRSWFHFLPICLLLALSGPAAAVPTEPLVLGAED
DWYPYTAYKDGRIQGMSADIVRAAFRAADTPVQLNPYPYSRCMKLALKGLIAGCFNTSPNPHILADYRLPRH
PLFRAEIQLWARRDEARPVNAEQALSGRKVAVTLGYEYGDGFDRRHDLVRIPVRKDYYGFLMLQRGRVDYAL
AYRNTARQLFSEHPELEGQFQPVATVHRPELYLSFSRRHPQAEHLLERFDLGMQRILASGEYQKILDGWSQA
ADATP*
AnnotationID:2478GeneID:2470
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:32
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type amino acid transporter
Cell Localization:()
Synonyms:PA5270
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0834,smart00062,pfam00497
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  98.2% aligned
Score = 78.2 bits (191), Expect = 1e-15

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  97.7% aligned
Score = 71.5 bits (175), Expect = 9e-14

pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues,  98.7% aligned
Score = 68.4 bits (167), Expect = 1e-12
Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 15/228 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14597




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22089




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34815




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2470_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2470
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4145
                           PA5270_tr
                           translation of PA5270
                           293
                           99.31
                           99.65
                           0
                           1550.0
     

     
     
123400
                           gb|AAG08655.1|AE004939_7
                           (AE004939) hypothetical protein PA5270 [Pseudomonas aeruginosa PAO1]
                           293
                           98.97
                           99.65
                           0
                           1547.0
     

     






      

          
GC ORFID: 45472How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5270Glimmer Score: 

          
Start: 5471966Stop: 5472847

          
Length: 882


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5270 translation of PA5270Homolog Bit Score 601.0

          
Other Homologs:  t_PA5270 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGGCGAATGCCCCTCGTATCCATACGGTTTTGTTTCGCCAAACGCCTGCCGCTCTGGTAGAAAGGTGG 
CGCCCACTCTCCGTGCCACCTGCTTTCGCGGAGCGATACCGGATGCGATCCTGGTTCCACTTCCTGCCCATC 
TGCCTGCTGCTGGCCCTTTCCGGCCCGGCAGCGGCCGTCCCGACAGAACCCCTGGTGCTCGGCGCCGAAGAC 
GACTGGTATCCCTATACCGCCTACAAGGaCGGCCGCATCCAGGGCATGAGCGCGGACATCGTGCGGGCCGCC 
TTCAGGGCTGCGGACACGCCGGTCCAGCTCAATCCCTACCCCTACTCCCGCTGCATGAAGCTGGCCCTGAAA 
GGCTTGATCGCCGGCTGCTTCAACACCTCGCCGAACCCGCACATCCTCGCCGACTACCGTCTGCCCCGGCAT 
CCGTTGTTCCGCGCGGAGATCCAGCTCTGGGCGCGACGCGACGAAGCGCGGCCGGTGAATGCGGAGCAGGCG 
CTGAGCGGACGGAAAGTCGCGGTGACCCTCGGCTATGAATACGGCGACGGCTTCGATCGCCGCCACGACCTG 
GTGCGCATTCCGGTGCGCAAGGACTACTACGGTTTCCTCATGCTCCAGCGCGGCCGCGTCGACTACGCCCTG 
GCCTACCGCAATACGGCTCGCCAGTTGTTCAGCGAACATCCCGAACTGGAAGGCCAGTTCCAGCCGGTGGCC 
ACGGTCCACCGCCCGGAGCTGTACCTGTCGTTCTCGCGCCGCCACCCGCAGGCCGAGCATCTGCTCGAACGC 
TTCGACCTCGGCATGCAGCGCATCCTCGCCAGCGGCGAGTACCAGAAGATCCTCGACGGCTGGAGCCAGGCC 
GCCGACGCTACGCCCTAG