ViewGene

Locus Name:
GeneID:
Location:

GeneID:2469
TrivialName: PA14_17630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17630
PAO1 Ortholog Locus:PA3608
Sequence Length:894
Protein Length:297
Start: 1515834
Stop: 1514941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06996.1|AE004781_4 (AE004781) polyamine transport protein PotB [Pseudomonas aeruginosa PAO1]
Identities = 297/297 (100%), Positives = 297/297 (100%)
Sequence:
ATGAGAAAGAACCTCGGCAAGTGGCTGCTGGTCTGGCCGCCGCAAGCGTATCTGCTGTTCTTCTTCCTGGTT
CCGGCGCTGATCATGCTGTTCGCCTCGTTCCGCTTTCCCGGCGACTACGGCGGCCTGGCGCCCTGGATGTAC
AGCGAGGACGGGCAGACCGTCTACGACCTCAGCGTGGAGAACTACACCCGGCTCACCGAGAGCTGGGTGTAC
CTGCAACTGTTCGTCAAATCCTTCGGCTACGCCCTGGTCACCACCCTGGCCTGCCTGCTGCTCGCCTACCCG
GTGGCGACCACCCTCGCCCGGGCCCCGGCGAAGTGGCGCAACCTGCTGATCCTGCTGGTGATCCTGCCGTTC
TGGAGCAACCTGCTGGTACGCGTCTACGCCTGGATGATCATCCTCTCGCCGTCCGGTGCCCTGACCCGCGGG
ATCAACGCCGCGCTGGACCTGTTCGGCGCGCAGCCGATCAGCCTGATGTTCACCCCGTTCGCGGTGATCCTG
TGCATGGTCTACGTGCACCTGCCGTTCATGATCCTGCCGCTCTACGCCAACCTGGAGAAACACGACCCGGCC
CTGCTGGACGCCGCCCAGGACCTCGGCGCCGGTCGTTGGCAACGCTTCTGGCGGGTGACCTTCCCGCTCTCG
CTGCCGGGCGTGGCCGCCGGCGCGGCACTGGTATTCATCCCGGTGCTGGGAATGTTCGCCATCCCCGACCTG
GTCGGCGGTACCGACGGCATCATGATCGGCAACCTGATCAAGAGCCAGTTCCTCGACTCCCGCGACTGGCCG
TTCGGCAGCGCGCTGTCGATCGCCCTGACCGGCTGCATCCTGCTGCTGGTCGCCCTCGGCATGGGCGCCGCG
CGCGCCCGCAAGGGAGGCGCCCATGCGTAG
Translation:
MRKNLGKWLLVWPPQAYLLFFFLVPALIMLFASFRFPGDYGGLAPWMYSEDGQTVYDLSVENYTRLTESWVY
LQLFVKSFGYALVTTLACLLLAYPVATTLARAPAKWRNLLILLVILPFWSNLLVRVYAWMIILSPSGALTRG
INAALDLFGAQPISLMFTPFAVILCMVYVHLPFMILPLYANLEKHDPALLDAAQDLGAGRWQRFWRVTFPLS
LPGVAAGAALVFIPVLGMFAIPDLVGGTDGIMIGNLIKSQFLDSRDWPFGSALSIALTGCILLLVALGMGAA
RARKGGAHA*
AnnotationID:2477GeneID:2469
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:31
Gene Name:potB
Confidence Code:2
GeneProduct:polyamine transport protein PotB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1176
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD85782.1| (BX321862) potB; putative spermidine/putrescine transport system
           permease protein [Nitrosomonas europaea ATCC 19718]
          Length = 302

 Score =  359 bits (921), Expect = 1e-98
 Identities = 173/300 (57%), Positives = 223/300 (74%), Gaps = 5/300 (1%)

>gb|AAN54340.1|AE015571_3 (AE015571) polyamine ABC transporter, permease protein [Shewanella
           oneidensis MR-1]
          Length = 301

 Score =  222 bits (566), Expect = 2e-57
 Identities = 118/284 (41%), Positives = 182/284 (64%), Gaps = 13/284 (4%)

Structural Features:
COG1176, PotB, ABC-type spermidine/putrescine transport system, 
permease component I 
[Amino acid transport and metabolism]
CD-Length = 287 residues,  98.6% aligned
Score =  253 bits (649), Expect = 3e-68
Identities = 140/295 (47%), Positives = 185/295 (62%), Gaps = 12/295 (4%)
Genomic Context:
Comment:
ReferenceID:4941
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22087
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31933
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2469_cdd.html
URL:
ReferenceID:34165
Author/Investigator(s): Kashiwagi K, Miyamoto S, Nukui E, Kobayashi H, Igarashi K.
Title: Functions of potA and potD proteins in spermidine-preferential uptake system in Escherichia coli. Kashiwagi K, Miyamoto S, Nukui E, Kobayashi H, Igarashi K.
PubMed: 8366082
MedLine:
Source:
J Biol Chem. 1993 Sep 15;268(26):19358-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8366082
Homologs By Global Alignment
Gene ID:2469

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4142 PA3608_tr translation of PA3608 297 99.99 99.99 0 1550.0
123332 gb|AAG06996.1|AE004781_4 (AE004781) polyamine transport protein PotB [Pseudomonas aeruginosa PAO1] 297 99.99 99.99 0 1550.0
123333 gb|AAQ61762.1| (AE016924) polyamine transport protein PotB [Chromobacterium violaceum ATCC 12472] 297 65.99 79.12 2 1044.0
123334 emb|CAD85782.1| (BX321862) potB; putative spermidine/putrescine transport system permease protein [Nitrosomonas europaea ATCC 19718] 303 57.09 73.59 7 923.0
4143 PA0325_tr translation of PA0325 326 41.10 56.74 46 590.0
GC ORFID: 45471How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3608Glimmer Score:
Start: 3438103Stop: 3438996
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3608 translation of PA3608Homolog Bit Score 601.0
Other Homologs: t_PA0325 (ORF: BLASTX 226.0), t_PA0303 (ORF: BLASTX 215.0), psyr_15may02_Scaffold6_revised_gene6514 (ORF: BLASTX 209.0), t_PA3608 (ORF: GLIMMER)
GC ORF Sequence
ATGAGAAAGAACCTCGGCAAGTGGCTGCTGGTCTGGCCGCCGCAAGCGTATCTGCTGTTCTTCTTCCTGGTT
CCGGCGCTGATCATGCTGTTCGCCTCGTTCCGCTTTCCCGGCGACTACGGCGGCCTGGCGCCCTGGATGTAC
AGCGAGGACGGGCAGACCGTCTACGACCTCAGCGTGGAGAACTACACCCGGCTCACCGAGAGCTGGGTGTAC
CTGCAACTGTTCGTCAAATCCTTCGGCTACGCCCTGGTCACCACCCTGGCCTGCCTGCTGCTCGCCTACCCG
GTGGCGACCACCCTCGCCCGGGCCCCGGCGAAGTGGCGCAACCTGCTGATCCTGCTGGTGATCCTGCCGTTC
TGGAGCAACCTGCTGGTACGCGTCTACGCCTGGATGATCATCCTCTCGCCGTCCGGTGCCCTGACCCGCGGG
ATCAACGCCGCGCTGGACCTGTTCGGCGCGCAGCCGATCAGCCTGATGTTCACCCCGTTCGCGGTGATCCTG
TGCATGGTCTACGTGCACCTGCCGTTCATGATCCTGCCGCTCTACGCCAACCTGGAGAAACACGACCCGGCC
CTGCTGGACGCCGCCCAGGACCTCGGCGCCGGTCGTTGGCAACGCTTCTGGCGGGTGACCTTCCCGCTCTCG
CTGCCGGGCGTGGCCGCCGGCGCGGCACTGGTATTCATCCCGGTGCTGGGAATGTTCGCCATCCCCGACCTG
GTCGGCGGTACCGACGGCATCATGATCGGCAACCTGATCAAGAGCCAGTTCCTCGACTCCCGCGACTGGCCG
TTCGGCAGCGCGCTGTCGATCGCCCTGACCGGCTGCATCCTGCTGCTGGTCGCCCTCGGCATGGGCGCCGCG
CGCGCCCGCAAGGGAGGCGCCCATGCGTAG