ViewGene

Locus Name:
GeneID:
Location:

GeneID:2467
TrivialName: PA14_05850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05850
PAO1 Ortholog Locus:PA0448
Sequence Length:909
Protein Length:302
Start: 517400
Stop: 518308
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03837.1|AE004482_4 (AE004482) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/302 (99%), Positives = 302/302 (100%)
Sequence:
ATGCGACGCAAGATCCCTTCCACCGCCGCGCTGGTCAGCTTCGAATCCGCCGCGCGCCACGAGAGCTTCACC
AAGGCGGCGGAGGAGTTGTCCCTGACCCAGAGCGCGATCTGCCGGCAGATCGCCACGCTCGAGGAGTTCCTC
GGTGTCGAGCTGTTCCGTCGCTCGCGGCGCGGGGTCAAGCTCACCGAGGCCGGGCTGTCCTATAGCCGGCGG
GTGGCGGTACGCCTCGACGCGGTGGAGCGCGACACCCTGGCGGTGATGGGGCACCAGGGCGGCGGCGCGATC
GAACTGGCGGTGGTGCCGACCTTCGGCACCCAATGGCTGTTGCCGCGGCTCAAGCGCTTCCAGCGGCTGCAC
CCGGAGGTCACGGTCAACCTGACCAACCGCACCCGCCCGTTCCTCTTCGCCGACACCGAGTTCGACGCCGCG
CTGTACTTCGGCGACGCCGACTGGTCGGGTACCGTCTCGCATTTCCTGATGCGCGAGAATCCGGTGCCGGTG
TGCAGCCCGGAGCTGCTGGGCGGGCGTCGAACGCTGAGCGCCGAGCAGGTCGCCGGGCTGCCGCTGATGCAG
CAGAGCACCCGGCCCTACGCTTGGCGCCAGTGGTTTCACTCCCAGGGACTGAACGTCGCCCACGACATGAGC
GGGCCGCGCTACGAGCTGTTCTCCATGCTTGCCCAGGCGGCCATGCACGGCATGGGCGTGGCCCTGATACCG
CCCTTCCTGATCCAGGACGAGCTGGCCGACGGAAGGCTTATCGTGCCCATGCAACATGCCTATTTGAGCGAG
AATGCGTATTACCTGATCATTCCCGAGCGCAGGGTCGAATCGGCGATGCTCAATGCCTTCCGCGACTGGCTG
GTGGAAGAGGCCAGGCAGTACCGCGAGGCCAACGGGCTGGGCTGA
Translation:
MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYSRR
VAVRLDAVERDTLAVMGHQGGGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNLTNRTRPFLFADTEFDAA
LYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRTLSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMS
GPRYELFSMLAQAAMHGMGVALIPPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWL
VEEARQYREANGLG*
AnnotationID:2475GeneID:2467
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0448
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65790.1|AE016205_3 (AE016774) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 305

 Score =  459 bits (1181), Expect = e-129
 Identities = 228/300 (76%), Positives = 256/300 (85%)

>gb|AAO58882.1| (AE016875) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 306

 Score =  456 bits (1173), Expect = e-128
 Identities = 228/295 (77%), Positives = 253/295 (85%)

Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  137 bits (345), Expect = 1e-33
Identities = 84/300 (28%), Positives = 123/300 (41%), Gaps = 10/300 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  108 bits (271), Expect = 8e-25
Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 10/212 (4%)
Genomic Context:
Comment:
ReferenceID:4937
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22083
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33746
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2467_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2467

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4139 PA0448_tr translation of PA0448 302 99.66 99.99 0 1552.0
123263 gb|AAG03837.1|AE004482_4 (AE004482) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 302 99.66 99.99 0 1552.0
123264 gb|AAN65790.1|AE016205_3 (AE016774) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 305 74.75 83.93 3 1180.0
123265 gb|AAO58882.1| (AE016875) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] 310 73.87 81.93 12 1163.0
123268 emb|CAD18744.1| (AL646085) PROBABLE TRANSCRIPTION REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 305 45.57 60.65 12 658.0
GC ORFID: 45469How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0448Glimmer Score:
Start: 6318742Stop: 6319650
Length: 909
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0448 translation of PA0448Homolog Bit Score 602.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7782 (ORF: BLASTX 217.0), psyr_15may02_Scaffold13_revised_gene2168 (ORF: BLASTX 213.0), t_PA0448 (ORF: GLIMMER)
GC ORF Sequence
ATGCGACGCAAGATCCCTTCCACCGCCGCGCTGGTCAGCTTCGAATCCGCCGCGCGCCACGAGAGCTTCACC
AAGGCGGCGGAGGAGTTGTCCCTGACCCAGAGCGCGATCTGCCGGCAGATCGCCACGCTCGAGGAGTTCCTC
GGTGTCGAGCTGTTCCGTCGCTCGCGGCGCGGGGTCAAGCTCACCGAGGCCGGGCTGTCCTATAGCCGGCGG
GTGGCGGTACGCCTCGACGCGGTGGAGCGCGACACCCTGGCGGTGATGGGGCACCAGGGCGGCGGCGCGATC
GAACTGGCGGTGGTGCCGACCTTCGGCACCCAATGGCTGTTGCCGCGGCTCAAGCGCTTCCAGCGGCTGCAC
CCGGAGGTCACGGTCAACCTGACCAACCGCACCCGCCCGTTCCTCTTCGCCGACACCGAGTTCGACGCCGCG
CTGTACTTCGGCGACGCCGACTGGTCGGGTACCGTCTCGCATTTCCTGATGCGCGAGAATCCGGTGCCGGTG
TGCAGCCCGGAGCTGCTGGGCGGGCGTCGAACGCTGAGCGCCGAGCAGGTCGCCGGGCTGCCGCTGATGCAG
CAGAGCACCCGGCCCTACGCTTGGCGCCAGTGGTTTCACTCCCAGGGACTGAACGTCGCCCACGACATGAGC
GGGCCGCGCTACGAGCTGTTCTCCATGCTTGCCCAGGCGGCCATGCACGGCATGGGCGTGGCCCTGATACCG
CCCTTCCTGATCCAGGACGAGCTGGCCGACGGAAGGCTTATCGTGCCCATGCAACATGCCTATTTGAGCGAG
AATGCGTATTACCTGATCATTCCCGAGCGCAGGGTCGAATCGGCGATGCTCAATGCCTTCCGCGACTGGCTG
GTGGAAGAGGCCAGGCAGTACCGCGAGGCCAACGGGCTGGGCTGA