ViewGene
Locus Name:
GeneID:
Location:

GeneID:2466
TrivialName: PA14_02390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02390
PAO1 Ortholog Locus:PA0191
Sequence Length:918
Protein Length:305
Start: 215557
Stop: 214640
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03581.1|AE004457_2 (AE004457) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 304/305 (99%), Positives = 304/305 (99%)
Sequence:
ATGGATCTGCGCCAACTGCGTTACTTCATCGCCCTCGCCGAACACCGCAGTTTCGTCCGCGCGGCGGACGCC
ATGGGCATCACCCAGCCGGCCTTCAGCCGCAGCATCCAGGGCCTGGAGCAGGAGCTTGGCTGCCAGTTGGTG
GACCGTGGCAGCAAGGACCTGCGCCCGACGCCGGAAGGCCAGGTGGTGCTGCAACACGCGCTGAGCCTGGTG
CAGGGGTCGGCCAACCTGATCCACGAGATCGCCCAGTTGAACAAGCTGGATACCGGCGAGCTGCGCTTCGGC
AGCGGGCCGGCGCCGGCCCAGCAACTGGTGCCGGACGCGGTGGCCGACTTCATCAACCGCCACCCGCGGGTG
CAGATCAGCCTGGACGTGGACAACTGGGAAAAGCTCAGCCGCGCCCTGCTCCGCGAAGAGATCGAATTCTTC
GTCGCCGACATCCGCGACTTCGAGGCCGACCCGAACTTCCAGACGCGCCCGCTGACCCCGCGCCGCGGCCAG
TTCTTCTGCCGTCCGCAACATCCGCTGCTGGGCAAGGACAGCCTGTCCACCAACGACCTGTTCAACTACCCG
CTGGCCTCGACCCTGATTCCCCCGGGCATCCGCAAGCTGCTGGCGAACCTCAGCGGCAAGATCGACTTCGCC
GCCAACATCCGCTGCGAGAACATGCACGCGCTGATCCGCATCGTCCGCCAGACCGACGCCATCGGCATCGCC
AGCGACGAGACCCTGCGCCCCTACCTGCAGCGCGGCGAACTGCAACCGCTACAGTGGCGCAACCTGCCGCAG
AACCTGGATAGCCTCAGCGCCCGCTGCGGCATCATCAGCCGCAGCGGCTACCGGCTTTCGGCGGCGGCCAAG
GCGATGATCGAGACGCTGGTGGAACTGGACCAGGCGCAACACGCGGCGGCCTGA
Translation:
MDLRQLRYFIALAEHRSFVRAADAMGITQPAFSRSIQGLEQELGCQLVDRGSKDLRPTPEGQVVLQHALSLV
QGSANLIHEIAQLNKLDTGELRFGSGPAPAQQLVPDAVADFINRHPRVQISLDVDNWEKLSRALLREEIEFF
VADIRDFEADPNFQTRPLTPRRGQFFCRPQHPLLGKDSLSTNDLFNYPLASTLIPPGIRKLLANLSGKIDFA
ANIRCENMHALIRIVRQTDAIGIASDETLRPYLQRGELQPLQWRNLPQNLDSLSARCGIISRSGYRLSAAAK
AMIETLVELDQAQHAAA*
AnnotationID:2474GeneID:2466
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:14
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0191
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD31779.1|AF126200_1 (AF126200) regulator protein AsfR [Pseudomonas putida]
          Length = 314

 Score =  229 bits (585), Expect = 1e-59
 Identities = 125/300 (41%), Positives = 186/300 (62%), Gaps = 7/300 (2%)

>gb|AAA25988.1| (M86744) positive transcriptional control factor [Pseudomonas sp.]
          Length = 306

 Score =  224 bits (570), Expect = 6e-58
 Identities = 124/299 (41%), Positives = 180/299 (60%), Gaps = 6/299 (2%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  133 bits (335), Expect = 3e-32
Identities = 80/305 (26%), Positives = 126/305 (41%), Gaps = 9/305 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  96.7% aligned
Score =  105 bits (264), Expect = 5e-24
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 9/209 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4935




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22081




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33559




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2466_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2466
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4136
                           PA0191_tr
                           translation of PA0191
                           305
                           99.67
                           99.67
                           0
                           1551.0
     

     
     
123257
                           gb|AAG03581.1|AE004457_2
                           (AE004457) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           305
                           99.67
                           99.67
                           0
                           1551.0
     

     
     
4137
                           PA2334_tr
                           translation of PA2334
                           308
                           53.57
                           69.15
                           8
                           802.0
     

     
     
123258
                           gb|AAG05722.1|AE004659_8
                           (AE004659) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           308
                           53.57
                           69.15
                           8
                           802.0
     

     
     
123259
                           gb|AAD31783.1|AF126201_1
                           (AF126201) SftR [Pseudomonas putida]
                           308
                           49.35
                           65.90
                           7
                           761.0
     

     






      

          
GC ORFID: 45468How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0191Glimmer Score: 

          
Start: 6016896Stop: 6015979

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0191 translation of PA0191Homolog Bit Score 602.0

          
Other Homologs:  t_PA2334 (ORF: BLASTX 312.0), t_PA0739 (ORF: BLASTX 223.0), t_PA0191 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCTGCGCCAACTGCGTTACTTCATCGCCCTCGCCGAACACCGCAGTTTCGTCCGCGCGGCGGACGCC 
ATGGGCATCACCCAGCCGGCCTTCAGCCGCAGCATCCAGGGCCTGGAGCAGGAGCTTGGCTGCCAGTTGGTG 
GACCGTGGCAGCAAGGACCTGCGCCCGACGCCGGAAGGCCAGGTGGTGCTGCAACACGCGCTGAGCCTGGTG 
CAGGGGTCGGCCAACCTGATCCACGAGATCGCCCAGTTGAACAAGCTGGATACCGGCGAGCTGCGCTTCGGC 
AGCGGGCCGGCGCCGGCCCAGCAACTGGTGCCGGACGCGGTGGCCGACTTCATCAACCGCCACCCGCGGGTG 
CAGATCAGCCTGGACGTGGACAACTGGGAAAAGCTCAGCCGCGCCCTGCTCCGCGAAGAGATCGAATTCTTC 
GTCGCCGACATCCGCGACTTCGAGGCCGACCCGAACTTCCAGACGCGCCCGCTGACCCCGCGCCGCGGCCAG 
TTCTTCTGCCGTCCGCAACATCCGCTGCTGGGCAAGGACAGCCTGTCCACCAACGACCTGTTCAACTACCCG 
CTGGCCTCGACCCTGATTCCCCCGGGCATCCGCAAGCTGCTGGCGAACCTCAGCGGCAAGATCGACTTCGCC 
GCCAACATCCGCTGCGAGAACATGCACGCGCTGATCCGCATCGTCCGCCAGACCGACGCCATCGGCATCGCC 
AGCGACGAGACCCTGCGCCCCTACCTGCAGCGCGGCGAACTGCAACCGCTACAGTGGCGCAACCTGCCGCAG 
AACCTGGATAGCCTCAGCGCCCGCTGCGGCATCATCAGCCGCAGCGGCTACCGGCTTTCGGCGGCGGCCAAG 
GCGATGATCGAGACGCTGGTGGAACTGGACCAGGCGCAACACGCGGCGGCCTGA