ViewGene
Locus Name:
GeneID:
Location:

GeneID:2465
TrivialName: PA14_57990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57990
PAO1 Ortholog Locus:PA4467
Sequence Length:933
Protein Length:310
Start: 5161011
Stop: 5160079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07855.1|AE004860_11 (AE004860) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/310 (100%), Positives = 310/310 (100%)
Sequence:
ATGGCTGGCCGGCAGCCTGGCGGTGCAGCGATGAAGGCGTTGCTCCATGGCATCGCCGAAGGTAACGGGCGG
ACGCTGCGCAACCTGCTGGGCCTGCTGATCTTCATCGGCGGCGGCTACCTGCTCGGCCGCCACGCCCTGTTG
CTGGCCGAACTCAACCTGCCGGCGCCCATCGTGCTGGCGTTGAAAGGCGGCCTGCTCTGCGCCTTCGGTACC
GCTCTCGGGGCGATGCCGGTGCTGGTGGTGAAGACCATGCCGGCGCGCCTGTCGGATGCGCTGCTGGGCTTC
GGTGCCGGCGTGATGCTCTCGGCGACGGCCTTCTCGCTGATCATGCCGGCGCTATCCGCGGCCGGCGACCTC
GGCTACTCGAAGTTCGGCGCGGGGTTCCTGGTCAGTTTCGGCCTGGCGGTCGGCGTGATGGGGCTGTTCATC
CTCGGCCGGCTGATGCCGGACGTCCATCCCGGTTGCGAGGGCGCGCCACTGTCTGGTGGCATTCCCCCGCGC
ATCCTGCTGTTCGTCACGGCCATCGTCCTGCACAACATCCCCGAAGGCATGGCGGTTGGCGTGTCGGCCGGT
GCCGGCCTGGACGAGGCCAACGGCCTCGCCCTGGGCATCGCTCTGCAGGATGTGCCGGAAGGGCTGGTGGTG
GCGCTGGTGCTGGCCGGAGTCGGTATGTCGCGTTTCAAGGCGATGCTGGTCGGTGCCGCGTCGGGCCTGGTC
GAGCCGCTGTTCGCGGTGCTCTGCGCCTGGCTGGTCGGCCTCTCCGCGCTGCTCCTGCCCTGGGGGCTGGCC
GCCGCGGCGGGAGCGATGCTCTTCGTGGTCACCCACGAGATCATTCCCGAGTCCCACCGCCAGGGACATGCC
GCCGAGGCTACGCTGGGCCTGGTGTTCGGCTTCTGCCTGATGATGGTGCTGGATACCGCGCTGGGCTAG
Translation:
MAGRQPGGAAMKALLHGIAEGNGRTLRNLLGLLIFIGGGYLLGRHALLLAELNLPAPIVLALKGGLLCAFGT
ALGAMPVLVVKTMPARLSDALLGFGAGVMLSATAFSLIMPALSAAGDLGYSKFGAGFLVSFGLAVGVMGLFI
LGRLMPDVHPGCEGAPLSGGIPPRILLFVTAIVLHNIPEGMAVGVSAGAGLDEANGLALGIALQDVPEGLVV
ALVLAGVGMSRFKAMLVGAASGLVEPLFAVLCAWLVGLSALLLPWGLAAAAGAMLFVVTHEIIPESHRQGHA
AEATLGLVFGFCLMMVLDTALG*
AnnotationID:2473GeneID:2465
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 08:08:16
Gene Name:
Confidence Code:3
GeneProduct:putative heavy-metal transporter
Cell Localization:()
Synonyms:PA4467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0428
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE40573.1| (BX640411) probable metal transporter [Bordetella pertussis]
          Length = 297

 Score =  251 bits (641), Expect = 4e-66
 Identities = 141/257 (54%), Positives = 178/257 (69%), Gaps = 7/257 (2%)






 
Structural Features:
COG0428, Predicted divalent heavy-metal cations transporter 
[Inorganic ion transport and metabolism]
CD-Length = 266 residues,  99.6% aligned
Score =  139 bits (351), Expect = 9e-34
Identities = 123/266 (46%), Positives = 161/266 (60%), Gaps = 8/266 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4933




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22079




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31507




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2465_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2465
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4135
                           PA4467_tr
                           translation of PA4467
                           310
                           99.99
                           99.99
                           0
                           1551.0
     

     
     
123237
                           gb|AAG07855.1|AE004860_11
                           (AE004860) hypothetical protein PA4467 [Pseudomonas aeruginosa PAO1]
                           310
                           99.99
                           99.99
                           0
                           1551.0
     

     
     
123238
                           gb|AAN66572.1|AE016285_10
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           314
                           56.36
                           69.74
                           16
                           816.0
     

     
     
123242
                           gb|AAO55571.1|
                           (AE016863) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           327
                           43.42
                           55.96
                           39
                           535.0
     

     
     
123245
                           emb|CAE36641.1|
                           (BX640427) putative membrane protein [Bordetella parapertussis]
                           334
                           43.41
                           55.38
                           49
                           534.0
     

     






      

          
GC ORFID: 45467How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4467Glimmer Score: 

          
Start: 4424690Stop: 4423758

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4467 translation of PA4467Homolog Bit Score 602.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene546 (ORF: BLASTX 207.0), t_PA4467 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGGCCGGCAGCCTGGCGGTGCAGCGATGAAGGCGTTGCTCCATGGCATCGCCGAAGGTAACGGGCGG 
ACGCTGCGCAACCTGCTGGGCCTGCTGATCTTCATCGGCGGCGGCTACCTGCTCGGCCGCCACGCCCTGTTG 
CTGGCCGAACTCAACCTGCCGGCGCCCATCGTGCTGGCGTTGAAAGGCGGCCTGCTCTGCGCCTTCGGTACC 
GCTCTCGGGGCGATGCCGGTGCTGGTGGTGAAGACCATGCCGGCGCGCCTGTCGGATGCGCTGCTGGGCTTC 
GGTGCCGGCGTGATGCTCTCGGCGACGGCCTTCTCGCTGATCATGCCGGCGCTATCCGCGGCCGGCGACCTC 
GGCTACTCGAAGTTCGGCGCGGGGTTCCTGGTCAGTTTCGGCCTGGCGGTCGGCGTGATGGGGCTGTTCATC 
CTCGGCCGGCTGATGCCGGACGTCCATCCCGGTTGCGAGGGCGCGCCACTGTCTGGTGGCATTCCCCCGCGC 
ATCCTGCTGTTCGTCACGGCCATCGTCCTGCACAACATCCCCGAAGGCATGGCGGTTGGCGTGTCGGCCGGT 
GCCGGCCTGGACGAGGCCAACGGCCTCGCCCTGGGCATCGCTCTGCAGGATGTGCCGGAAGGGCTGGTGGTG 
GCGCTGGTGCTGGCCGGAGTCGGTATGTCGCGTTTCAAGGCGATGCTGGTCGGTGCCGCGTCGGGCCTGGTC 
GAGCCGCTGTTCGCGGTGCTCTGCGCCTGGCTGGTCGGCCTCTCCGCGCTGCTCCTGCCCTGGGGGCTGGCC 
GCCGCGGCGGGAGCGATGCTCTTCGTGGTCACCCACGAGATCATTCCCGAGTCCCACCGCCAGGGACATGCC 
GCCGAGGCTACGCTGGGCCTGGTGTTCGGCTTCTGCCTGATGATGGTGCTGGATACCGCGCTGGGCTAG