ViewGene
Locus Name:
GeneID:
Location:

GeneID:2464
TrivialName: PA14_57240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57240
PAO1 Ortholog Locus:PA4404
Sequence Length:924
Protein Length:307
Start: 5101231
Stop: 5100308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07792.1|AE004856_3 (AE004856) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 307/307 (100%), Positives = 307/307 (100%)
Sequence:
ATGCACATCATTTTTCTGAGCCGGCACCATGGGGCCGCTCGCTCCGTCCATCTGCAGCCGCGGTTGCTGATG
CTGGCCGGGGCTTGCGTGGTCGGTGCCAGCCTGTTGGCCGGGGGCTTCATGGGCGCCTGGCTGTTCCGCGCG
CCGGCTCCGGTGGCCGGCATCGAAGTCGATGCCGCGCTGCAGGCGCAGAGCGCCGAGATCAGCAGCGCCCGC
GAGGACGCGCAGCGGCAGATGGACGCACTGAGCGTGCATCTCGGCGAACTGCAGGCGCGCCTGGTTCGGCTG
GATGCCCTCGGCGAACGTCTCACCGAGCTGGCCGACGTCGACCCCGACGAGTTCGACTTCTCCCTGAGCGTC
GGTCAGGGTGGCGTCGACGAACCGCTGGAGGGCAGCGCCTATGCCCCGCCGTCGTTCATGGCGACGCTGGAC
GAACTGGCGGCACGCCTGGATACCCGCGAGCAGCAGCTCGAGGTGCTGGAGCAACTGCTCGCCGACAAGCAC
ATCAGCCAGTCGACCTACCTGGCCGGCCAGCCGGTGCGCCAGGGCTACATCTCCTCGCCGTTCGGGCGCCGG
GTCAATCCGGTGAGCGGCCGCCTGAGCATGCACAAGGGCATCGACTTCGCCGCGCCGGCCGGCAGCGACGTG
GTGGCCGTGGCGGCGGGGGTGGTGACCTGGTCCGGGCGCAAGAACGGCTATGGCAACGTGGTCGAGGTCGGG
CACGCCGATGGCTACACCACGTTGTATGCCCATAACCAGAAGAACCTGGTCGAGGTCGGTGACCTGGTCAAG
CGCGGCCAGGTGCTGGCCAAGGTCGGCAGCACCGGACGCTCCACCGGCTACCACGTACATTTCGAAGTGATG
AAGGATGGCCGGGTAATGAATCCGCAAAGCTTCATCGCACGCGCGTCTGTTTCCGAGTGA
Translation:
MHIIFLSRHHGAARSVHLQPRLLMLAGACVVGASLLAGGFMGAWLFRAPAPVAGIEVDAALQAQSAEISSAR
EDAQRQMDALSVHLGELQARLVRLDALGERLTELADVDPDEFDFSLSVGQGGVDEPLEGSAYAPPSFMATLD
ELAARLDTREQQLEVLEQLLADKHISQSTYLAGQPVRQGYISSPFGRRVNPVSGRLSMHKGIDFAAPAGSDV
VAVAAGVVTWSGRKNGYGNVVEVGHADGYTTLYAHNQKNLVEVGDLVKRGQVLAKVGSTGRSTGYHVHFEVM
KDGRVMNPQSFIARASVSE*
AnnotationID:2472GeneID:2464
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 14:02:48
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:PA4404
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM35675.1| (AE011709) peptidase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 313

 Score =  234 bits (597), Expect = 5e-61
 Identities = 125/275 (45%), Positives = 172/275 (62%), Gaps = 2/275 (0%)

>gb|AAN57184.1|AE015853_2 (AE015853) peptidase, M23/M37 family [Shewanella oneidensis MR-1]
          Length = 299

 Score =  208 bits (530), Expect = 3e-53
 Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)







 
Structural Features:
pfam01551, Peptidase_M37, Peptidase family M23/M37.
CD-Length = 83 residues,  98.8% aligned
Score =  105 bits (264), Expect = 1e-23
Identities = 44/82 (53%), Positives = 58/82 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4931




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:28058




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2464_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2464
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4134
                           PA4404_tr
                           translation of PA4404
                           307
                           99.99
                           99.99
                           0
                           1553.0
     

     
     
123172
                           gb|AAG07792.1|AE004856_3
                           (AE004856) hypothetical protein PA4404 [Pseudomonas aeruginosa PAO1]
                           307
                           99.99
                           99.99
                           0
                           1553.0
     

     
     
123173
                           gb|AAF26458.1|
                           (U19797) hypothetical protein [Pseudomonas aeruginosa]
                           307
                           99.99
                           99.99
                           0
                           1553.0
     

     
     
123174
                           gb|AAM35675.1|
                           (AE011709) peptidase [Xanthomonas axonopodis pv. citri str. 306]
                           324
                           41.66
                           58.64
                           28
                           596.0
     

     
     
123177
                           gb|AAF83615.1|AE003920_6
                           (AE003920) conserved hypothetical protein [Xylella fastidiosa 9a5c]
                           326
                           40.49
                           57.05
                           26
                           573.0
     

     






      

          
GC ORFID: 45466How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4404Glimmer Score: 

          
Start: 4364907Stop: 4363984

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4404 translation of PA4404Homolog Bit Score 602.0

          
Other Homologs:  t_PA4404 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACATCATTTTTCTGAGCCGGCACCATGGGGCCGCTCGCTCCGTCCATCTGCAGCCGCGGTTGCTGATG 
CTGGCCGGGGCTTGCGTGGTCGGTGCCAGCCTGTTGGCCGGGGGCTTCATGGGCGCCTGGCTGTTCCGCGCG 
CCGGCTCCGGTGGCCGGCATCGAAGTCGATGCCGCGCTGCAGGCGCAGAGCGCCGAGATCAGCAGCGCCCGC 
GAGGACGCGCAGCGGCAGATGGACGCACTGAGCGTGCATCTCGGCGAACTGCAGGCGCGCCTGGTTCGGCTG 
GATGCCCTCGGCGAACGTCTCACCGAGCTGGCCGACGTCGACCCCGACGAGTTCGACTTCTCCCTGAGCGTC 
GGTCAGGGTGGCGTCGACGAACCGCTGGAGGGCAGCGCCTATGCCCCGCCGTCGTTCATGGCGACGCTGGAC 
GAACTGGCGGCACGCCTGGATACCCGCGAGCAGCAGCTCGAGGTGCTGGAGCAACTGCTCGCCGACAAGCAC 
ATCAGCCAGTCGACCTACCTGGCCGGCCAGCCGGTGCGCCAGGGCTACATCTCCTCGCCGTTCGGGCGCCGG 
GTCAATCCGGTGAGCGGCCGCCTGAGCATGCACAAGGGCATCGACTTCGCCGCGCCGGCCGGCAGCGACGTG 
GTGGCCGTGGCGGCGGGGGTGGTGACCTGGTCCGGGCGCAAGAACGGCTATGGCAACGTGGTCGAGGTCGGG 
CACGCCGATGGCTACACCACGTTGTATGCCCATAACCAGAAGAACCTGGTCGAGGTCGGTGACCTGGTCAAG 
CGCGGCCAGGTGCTGGCCAAGGTCGGCAGCACCGGACGCTCCACCGGCTACCACGTACATTTCGAAGTGATG 
AAGGATGGCCGGGTAATGAATCCGCAAAGCTTCATCGCACGCGCGTCTGTTTCCGAGTGA