ViewGene
Locus Name:
GeneID:
Location:

GeneID:2461
TrivialName: PA14_17380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17380
PAO1 Ortholog Locus:PA3630
Sequence Length:909
Protein Length:302
Start: 1492891
Stop: 1491983
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07018.1|AE004783_3 (AE004783) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 299/302 (99%), Positives = 299/302 (99%)
Sequence:
ATGAATCGCTGGGAAGGACTCGACGAATTCGTCGCTGTCGCCGAAACCGGGCAGTTCACCGCGGCAGCCGAA
CGCATGGGCGTTTCCTCGTCGCACATCAGCCGCCAGGTCGCCCGCCTGGAGGAGCGCCTGCAGACCCGCCTG
CTCTACCGCAGCACCCGGCGAGTGTCGCTGAGCGAAGCCGGACAGACCTTCCTGCAACATTGCCAGCGCCTG
CAGGACGCCCGCGACGAAGCCCTGCGCGCGGTCAGCGACCTCTCCGCGGAGCCCAAGGGCCTGCTGCGCATG
ACCTGCGCCGTGGCCTACGGCGAACGTTTCATCGTGCCGCTGGTGAATGCCTTCATGGCCGACTATCCGCAA
CTGCGGGTCGACATCGAGCTGTCCAACCGCCAACTGGACCTGCTCCACGAGGGCTTCGACCTGGCCATCCGC
CTCGGCCGCCTGAGCGATTCGCGATTGGTCGCCACACGGTTGGCGCCACGCGTCATGTACCTCTGCACCACC
CCGGAATACCTGCGCCGCCACGGTACTCCGCAGTCGCCGACGGAACTCGGCCAGTTCAACTGCCTGATCGGC
AGCAGCGACCTGTGGAGCTTCCTCGAGGACGGCCGGGAAACCCAGCACCGGGTCCAGGGCAACTGGCGCTGC
AACAGCGGCCAGGCGGTGCTCGACGCCGCCCTACGCGGCTTCGGCCTGTGCCAGTTGCCTGACTACTATGTG
ATCGAGCATCTGCGCAGCGGCCGCCTGGTCTCCCTGCTGGAAGGCCACCAGCCGCCGAATACCGCGGTATGG
GCGCTGTACCCGCAGCAGCGGCACCTGTCGCCGAAAGTCCGGCAACTGGTGGACTATCTCAAGGAAGGCCTG
GCGCAATCCCATCCGGGACTCGCCGGGGAGAAAAACCTGCGCTGA
Translation:
MNRWEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQTFLQHCQRL
QDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRVDIELSNRQLDLLHEGFDLAIR
LGRLSDSRLVATRLAPRVMYLCTTPEYLRRHGTPQSPTELGQFNCLIGSSDLWSFLEDGRETQHRVQGNWRC
NSGQAVLDAALRGFGLCQLPDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKEGL
AQSHPGLAGEKNLR*
AnnotationID:2469GeneID:2461
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 20:08:23
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA3630
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67236.1|AE016350_9 (AE016780) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 298

 Score =  490 bits (1262), Expect = e-138
 Identities = 239/288 (82%), Positives = 262/288 (90%)

>gb|AAN53080.1|AE015922_9 (AE015922) transcriptional regulator, LysR family [Shewanella
           oneidensis MR-1]
          Length = 289

 Score =  322 bits (826), Expect = 1e-87
 Identities = 149/289 (51%), Positives = 214/289 (74%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.3% aligned
Score =  156 bits (394), Expect = 8e-39
Identities = 98/296 (33%), Positives = 140/296 (47%), Gaps = 6/296 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  123 bits (310), Expect = 5e-29
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 6/209 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4925




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31913




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2461_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2461
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4129
                           PA3630_tr
                           translation of PA3630
                           302
                           99.00
                           99.00
                           0
                           1552.0
     

     
     
123038
                           gb|AAG07018.1|AE004783_3
                           (AE004783) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           302
                           99.00
                           99.00
                           0
                           1552.0
     

     
     
123039
                           gb|AAN67236.1|AE016350_9
                           (AE016780) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           305
                           79.01
                           86.55
                           10
                           1254.0
     

     
     
123040
                           gb|AAO55077.1|
                           (AE016861) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           74.51
                           81.29
                           20
                           1199.0
     

     
     
123041
                           gb|AAK24488.1|
                           (AE005919) transcriptional regulator, LysR family [Caulobacter crescentus CB15]
                           302
                           53.31
                           69.53
                           10
                           837.0
     

     






      

          
GC ORFID: 45463How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3630Glimmer Score: 

          
Start: 3461046Stop: 3461954

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3630 translation of PA3630Homolog Bit Score 602.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4784 (ORF: BLASTX 469.0), t_PA3630 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGCTGGGAAGGACTCGACGAATTCGTCGCTGTCGCCGAAACCGGGCAGTTCACCGCGGCAGCCGAA 
CGCATGGGCGTTTCCTCGTCGCACATCAGCCGCCAGGTCGCCCGCCTGGAGGAGCGCCTGCAGACCCGCCTG 
CTCTACCGCAGCACCCGGCGAGTGTCGCTGAGCGAAGCCGGACAGACCTTCCTGCAACATTGCCAGCGCCTG 
CAGGACGCCCGCGACGAAGCCCTGCGCGCGGTCAGCGACCTCTCCGCGGAGCCCAAGGGCCTGCTGCGCATG 
ACCTGCGCCGTGGCCTACGGCGAACGTTTCATCGTGCCGCTGGTGAATGCCTTCATGGCCGACTATCCGCAA 
CTGCGGGTCGACATCGAGCTGTCCAACCGCCAACTGGACCTGCTCCACGAGGGCTTCGACCTGGCCATCCGC 
CTCGGCCGCCTGAGCGATTCGCGATTGGTCGCCACACGGTTGGCGCCACGCGTCATGTACCTCTGCACCACC 
CCGGAATACCTGCGCCGCCACGGTACTCCGCAGTCGCCGACGGAACTCGGCCAGTTCAACTGCCTGATCGGC 
AGCAGCGACCTGTGGAGCTTCCTCGAGGACGGCCGGGAAACCCAGCACCGGGTCCAGGGCAACTGGCGCTGC 
AACAGCGGCCAGGCGGTGCTCGACGCCGCCCTACGCGGCTTCGGCCTGTGCCAGTTGCCTGACTACTATGTG 
ATCGAGCATCTGCGCAGCGGCCGCCTGGTCTCCCTGCTGGAAGGCCACCAGCCGCCGAATACCGCGGTATGG 
GCGCTGTACCCGCAGCAGCGGCACCTGTCGCCGAAAGTCCGGCAACTGGTGGACTATCTCAAGGAAGGCCTG 
GCGCAATCCCATCCGGGACTCGCCGGGGAGAAAAACCTGCGCTGA