ViewGene
Locus Name:
GeneID:
Location:

GeneID:246
TrivialName: PA14_40320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40320
PAO1 Ortholog Locus:PA1868
Sequence Length:2331
Protein Length:776
Start: 3604201
Stop: 3601871
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05257.1|AE004613_2 (AE004613) secretion protein XqhA [Pseudomonas aeruginosa PAO1]
Identities = 771/776 (99%), Positives = 772/776 (99%)
Sequence:
ATGCCACGTTGTAGTACCCGTTCCGCCCAGCGCCTGTCTCCGCTGTTCCTGGTCCTGTCGCTGGCCGTCCTC
GGCCTGGCGCCGCCGGTCCATCCGGCACCTGCCGCGACTGCCGCCGCGCAAGAGGAAGAGCAGTGGACGATC
AACATGAAGGATGCCGAGATCGGCGACTTCATCGAGCAGGTATCGAGCATCAGCGGCCAGACCTTCGTCGTC
GATCCGCGGGTGAAGGGACGGGTCACGGTGGTATCCCAGGCGCGGCTCAGCCTGGCGGAGGTCTACCAACTG
TTCCTTTCGGTGCTCGCCACCCATGGCTACGCGGTGCTGCCGCAGGGCGACCAGGCGCGTATCGTGCCGAAC
ATGGAGGCACGCCAGGACGCCGCGCAGAAGACCGTCCGCGATGGGCCGGGCAGCCTGGAGACGCGGGTGGTC
CAGGCGCAGCAGACCTCGGTGGCGGAACTGATCCCGATGATCCGGCCGCTGGTCCCGGCCCATGGCCATCTG
GCCGCCGTGCCGTCGGCCAACGCGCTGATCGTCAGCGACCGCCGCGCCAACATCGAGCGCATCGAGGCGATC
GTGCGCAGCCTCGACCGGGCCGGCGAACATGACTACAGCATCTACGACATGCGCCATGCCTGGGTCGCGGAA
ATCGCCGAGGTGCTCGATCGCAGCGTCACCCCGGCCGCCGGGAAGAGCGCCGCCACCGTCCAGGTCCTCGCC
GACAGCCGCAGCAACCGCCTGGTCCTGCTCGGGCCGCCGCAGGCGCGAGCGCGCTTGCTGCGGCTGGCGCAG
TCGCTCGACGTCCCCTCGTCGCGGTCGGCGAACAGCCGGGTGATCCGCCTGCGCCATGGCGACGCCAAGACC
CTCGCCGCCACCCTCGGGGAGATCGGCGAATCGCTGCGCGGCGAGCGGGGCCAGGATGGACGGGGAAGCGGC
AAGCGCGGCCTGCTGGTGCGCGCCGACGAATCGCTGAATGCCCTGGTGATCCTCGCCGACCCGGAGGATGTC
GGTCTGCTCGAGGACATCGTCCGCCAGCTCGACGTGCCGCGTGCGCAACTGTTGGTGGAGGCGGCGATCGTC
GAGCTGTCCGGCGAGATCGGCGACGCCCTCGGGGTGCAATGGGCGCTGCGTAGCGGGCATGTCGCCGGCGGC
GCTGGCTTCGCCGACAGCGGGTTGTCCATCGGCACCCTGCTAGGCGCGTTGCAGGCCGGCAAGCCGCCGGCA
GAGCTGCCCGACGGTGCGATAGTCGGCCTCGGCAGTCGCGATTTCGGCGCACTGGTCACCGCGCTGAGCCGC
AATAGCCGCAGCAACCTGCTGTCGACGCCGAGCCTGCTGACCCTGGACAACCAGAAGGCGGAAATCCTGGTC
GGCCAGAACGTGCCGTTCCAGACCGGCAGCTACACCACCAGCGCCAGCGGTTCGAGCAATCCGTTCACCACT
GTCGAGCGCAAGGATATCGGGGTGACCCTCAAGGTCACGCCGCACATCGGCGAGGACCGCATGCTGCGCCTG
GAGATCGAGCAGGAAATATCCTCCATCGCGCCAACCGCCACCTTGGCGGCGAAGGCGGTGGACCTGGTGACC
AACAAGCGCTCGATCAAGAGCACCGTACTGGCCGACGACGGCCAGGTCATCGTCCTCGGCGGACTGATCCAG
GACGACCTGCTGCGCAGCGATTCGCGGGTACCGCTGCTGGGCGACATCCCCGGCGTCGGCCGGCTGTTCCGC
TCGTCCCGCGAGACCCGGGTGAAGCGCAACCTGATGGTCTTCCTGCGACCGAGCATCGTCCGCGATGCCGCC
GGCCTGGAGCGCATCAGCCATGGCCGTTACCGTTCCATCCAGTTGCTGCGCGGTGCCGCCGGCGAACCGGTA
CGCCCGCTGTTCGAGGATGCCGGCGCCATCGACCTGCGTCCCGCCGCCCAGGTCGCACCGGCACCTATTGGC
TCGCCGCGCAGCTATCCGGCTCCAGCCCCGGTGCTGATGGAGAAGCCGCGCCTGGCGGACCCGGCGTCCCTG
GGCGACGGTCGCGGCGGCGAGGTGCTGGAGGTTCGCCAGGGCACGCACGCGCCGCAGCCGCCGTCACCCCAG
CGCTACGCCGTGCGATTGGTCGAGGGCAGCAGCGAAGCCTTCATGCGCGCGCTGATCGAGCGGCATCCGGGC
CTGTCGTTGCGTTTGCGCCGCGAACTGCGCGATGGCCAGGAGCTGTTCGCGGTGGAGCGGGGCGACTACCTC
GACCCGGAGCAGGCACGCCGGGCCCTGGCGGAACTGCCCGAAAGCCTGCCGCGAGGGAAGGCGCGGGTGATT
GCGCATACGCCGGGAAGCGCCCTGTGA
Translation:
MPRCSTRSAQRLSPLFLVLSLAVLGLAPPVHPAPAATAAAQEEEQWTINMKDAEIGDFIEQVSSISGQTFVV
DPRVKGRVTVVSQARLSLAEVYQLFLSVLATHGYAVLPQGDQARIVPNMEARQDAAQKTVRDGPGSLETRVV
QAQQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSIYDMRHAWVAE
IAEVLDRSVTPAAGKSAATVQVLADSRSNRLVLLGPPQARARLLRLAQSLDVPSSRSANSRVIRLRHGDAKT
LAATLGEIGESLRGERGQDGRGSGKRGLLVRADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLVEAAIV
ELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSR
NSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRL
EIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVPLLGDIPGVGRLFR
SSRETRVKRNLMVFLRPSIVRDAAGLERISHGRYRSIQLLRGAAGEPVRPLFEDAGAIDLRPAAQVAPAPIG
SPRSYPAPAPVLMEKPRLADPASLGDGRGGEVLEVRQGTHAPQPPSPQRYAVRLVEGSSEAFMRALIERHPG
LSLRLRRELRDGQELFAVERGDYLDPEQARRALAELPESLPRGKARVIAHTPGSAL*
AnnotationID:256GeneID:246
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:24
Gene Name:xqhA
Confidence Code:1
GeneProduct:secretion protein XqhA
Cell Localization:()
Synonyms:xcpQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:outer membrane secretion protein Q
Functional Category Confidence Code:5
COGs:COG1450,pfam00263
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83352.1| (AF092918) outer membrane secretion protein Q [Pseudomonas
           alcaligenes]
          Length = 649

 Score =  737 bits (1902), Expect = 0.0
 Identities = 397/638 (62%), Positives = 497/638 (77%), Gaps = 17/638 (2%)

>dbj|BAC58396.1| (AP005073) general secretion pathway protein D precursor [Vibrio
           parahaemolyticus]
          Length = 675

 Score =  347 bits (889), Expect = 2e-94
 Identities = 222/663 (33%), Positives = 369/663 (55%), Gaps = 61/663 (9%)

>gb|AAN82534.1|AE016767_294 (AE016767) Probable general secretion pathway protein D precursor
           [Escherichia coli CFT073]
          Length = 654

 Score =  344 bits (882), Expect = 1e-93
 Identities = 224/637 (35%), Positives = 345/637 (54%), Gaps = 37/637 (5%)








 
Structural Features:
COG1450, PulD, Type II secretory pathway, component PulD 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 587 residues,  99.8% aligned
Score =  445 bits (1145), Expect = 1e-125
Identities = 231/636 (36%), Positives = 326/636 (51%), Gaps = 62/636 (9%)

pfam00263, Secretin_C, Bacterial type II and III secretion system protein.
CD-Length = 232 residues, 100.0% aligned
Score =  217 bits (553), Expect = 5e-57
Identities = 105/244 (43%), Positives = 142/244 (58%), Gaps = 12/244 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37084




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:246_cdd.html


    		




 
URL:

















    ReferenceID:37778




  
Author/Investigator(s):
        Martinez A, Ostrovsky P, Nunn DN.





  
Title:
        Identification of an additional member of the secretin superfamily of proteins in Pseudomonas aeruginosa that is able to function in type II protein secretion.




  
PubMed:
        9680212


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1235-46.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680212

















    ReferenceID:37779




  
Author/Investigator(s):
        Akrim M, Bally M, Ball G, Tommassen J, Teerink H, Filloux A, Lazdunski A.





  
Title:
        Xcp-mediated protein secretion in Pseudomonas aeruginosa: identification of two additional genes and evidence for regulation of xcp gene expression.




  
PubMed:
        7934833


MedLine:
        




    
Source:
Mol Microbiol. 1993 Oct;10(2):431-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7934833









           
Homologs By Global Alignment 

           

       



     
Gene ID:246
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
417
                           PA1868_tr
                           translation of PA1868
                           776
                           99.35
                           99.48
                           0
                           3818.0
     

     
     
23046
                           gb|AAG05257.1|AE004613_2
                           (AE004613) secretion protein XqhA [Pseudomonas aeruginosa PAO1]
                           776
                           99.35
                           99.48
                           0
                           3818.0
     

     
     
23047
                           gb|AAC38777.1|
                           (AF044261) XqhA [Pseudomonas aeruginosa]
                           792
                           84.84
                           85.10
                           95
                           3270.0
     

     
     
23050
                           gb|AAC83352.1|
                           (AF092918) outer membrane secretion protein Q [Pseudomonas alcaligenes]
                           796
                           50.50
                           63.19
                           167
                           1914.0
     

     
     
418
                           PA3105_tr
                           translation of PA3105
                           802
                           50.12
                           63.09
                           170
                           1955.0
     

     






      

          
GC ORFID: 43248How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1868Glimmer Score: 

          
Start: 1349709Stop: 1352039

          
Length: 2331


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1868 translation of PA1868Homolog Bit Score 1475.0

          
Other Homologs:  t_PA1868 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACGTTGTAGTACCCGTTCCGCCCAGCGCCTGTCTCCGCTGTTCCTGGTCCTGTCGCTGGCCGTCCTC 
GGCCTGGCGCCGCCGGTCCATCCGGCACCTGCCGCGACTGCCGCCGCGCAAGAGGAAGAGCAGTGGACGATC 
AACATGAAGGATGCCGAGATCGGCGACTTCATCGAGCAGGTATCGAGCATCAGCGGCCAGACCTTCGTCGTC 
GATCCGCGGGTGAAGGGACGGGTCACGGTGGTATCCCAGGCGCGGCTCAGCCTGGCGGAGGTCTACCAACTG 
TTCCTTTCGGTGCTCGCCACCCATGGCTACGCGGTGCTGCCGCAGGGCGACCAGGCGCGTATCGTGCCGAAC 
ATGGAGGCACGCCAGGACGCCGCGCAGAAGACCGTCCGCGATGGGCCGGGCAGCCTGGAGACGCGGGTGGTC 
CAGGCGCAGCAGACCTCGGTGGCGGAACTGATCCCGATGATCCGGCCGCTGGTCCCGGCCCATGGCCATCTG 
GCCGCCGTGCCGTCGGCCAACGCGCTGATCGTCAGCGACCGCCGCGCCAACATCGAGCGCATCGAGGCGATC 
GTGCGCAGCCTCGACCGGGCCGGCGAACATGACTACAGCATCTACGACATGCGCCATGCCTGGGTCGCGGAA 
ATCGCCGAGGTGCTCGATCGCAGCGTCACCCCGGCCGCCGGGAAGAGCGCCGCCACCGTCCAGGTCCTCGCC 
GACAGCCGCAGCAACCGCCTGGTCCTGCTCGGGCCGCCGCAGGCGCGAGCGCGCTTGCTGCGGCTGGCGCAG 
TCGCTCGACGTCCCCTCGTCGCGGTCGGCGAACAGCCGGGTGATCCGCCTGCGCCATGGCGACGCCAAGACC 
CTCGCCGCCACCCTCGGGGAGATCGGCGAATCGCTGCGCGGCGAGCGGGGCCAGGATGGACGGGGAAGCGGC 
AAGCGCGGCCTGCTGGTGCGCGCCGACGAATCGCTGAATGCCCTGGTGATCCTCGCCGACCCGGAGGATGTC 
GGTCTGCTCGAGGACATCGTCCGCCAGCTCGACGTGCCGCGTGCGCAACTGTTGGTGGAGGCGGCGATCGTC 
GAGCTGTCCGGCGAGATCGGCGACGCCCTCGGGGTGCAATGGGCGCTGCGTAGCGGGCATGTCGCCGGCGGC 
GCTGGCTTCGCCGACAGCGGGTTGTCCATCGGCACCCTGCTAGGCGCGTTGCAGGCCGGCAAGCCGCCGGCA 
GAGCTGCCCGACGGTGCGATAGTCGGCCTCGGCAGTCGCGATTTCGGCGCACTGGTCACCGCGCTGAGCCGC 
AATAGCCGCAGCAACCTGCTGTCGACGCCGAGCCTGCTGACCCTGGACAACCAGAAGGCGGAAATCCTGGTC 
GGCCAGAACGTGCCGTTCCAGACCGGCAGCTACACCACCAGCGCCAGCGGTTCGAGCAATCCGTTCACCACT 
GTCGAGCGCAAGGATATCGGGGTGACCCTCAAGGTCACGCCGCACATCGGCGAGGACCGCATGCTGCGCCTG 
GAGATCGAGCAGGAAATATCCTCCATCGCGCCAACCGCCACCTTGGCGGCGAAGGCGGTGGACCTGGTGACC 
AACAAGCGCTCGATCAAGAGCACCGTACTGGCCGACGACGGCCAGGTCATCGTCCTCGGCGGACTGATCCAG 
GACGACCTGCTGCGCAGCGATTCGCGGGTACCGCTGCTGGGCGACATCCCCGGCGTCGGCCGGCTGTTCCGC 
TCGTCCCGCGAGACCCGGGTGAAGCGCAACCTGATGGTCTTCCTGCGACCGAGCATCGTCCGCGATGCCGCC 
GGCCTGGAGCGCATCAGCCATGGCCGTTACCGTTCCATCCAGTTGCTGCGCGGTGCCGCCGGCGAACCGGTA 
CGCCCGCTGTTCGAGGATGCCGGCGCCATCGACCTGCGTCCCGCCGCCCAGGTCGCACCGGCACCTATTGGC 
TCGCCGCGCAGCTATCCGGCTCCAGCCCCGGTGCTGATGGAGAAGCCGCGCCTGGCGGACCCGGCGTCCCTG 
GGCGACGGTCGCGGCGGCGAGGTGCTGGAGGTTCGCCAGGGCACGCACGCGCCGCAGCCGCCGTCACCCCAG 
CGCTACGCCGTGCGATTGGTCGAGGGCAGCAGCGAAGCCTTCATGCGCGCGCTGATCGAGCGGCATCCGGGC 
CTGTCGTTGCGTTTGCGCCGCGAACTGCGCGATGGCCAGGAGCTGTTCGCGGTGGAGCGGGGCGACTACCTC 
GACCCGGAGCAGGCACGCCGGGCCCTGGCGGAACTGCCCGAAAGCCTGCCGCGAGGGAAGGCGCGGGTGATT 
GCGCATACGCCGGGAAGCGCCCTGTGA