ViewGene
Locus Name:
GeneID:
Location:

GeneID:2459
TrivialName: PA14_47870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47870
PAO1 Ortholog Locus:PA1265
Sequence Length:903
Protein Length:300
Start: 4260651
Stop: 4259749
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04654.1|AE004556_4 (AE004556) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/300 (100%), Positives = 300/300 (100%)
Sequence:
ATGCGCGCGACCACCTGCACCCCGCGAGCGATGCCCGGGGCGACCCGCCTGCTGGCCGTGCAACTGGGCATG
GTACTGGCCTGGAGTTCCGGCTTCGTCGGCTACCGCTATGCCATGGAACAGGCGCCGGTGTTCCTCACCAGC
TTCTGGCGTTTCGCCGTCTGCCTGGCGCTGCTGCTGCCCTTCGCCTGGGCCGGGCTGCGCCGGTTGTCGGCG
CGCCAGTGGCGGCGCCAGGCGCTGATCGGGGCGTTGGCCTACGCGGGCTACATAGCGCCGATCGCCAAGGCC
ATCGAACTCGGCGTCTCGCCGGGCGTGGCGGCGCTGATGGCCGACCTGTTGCCGCTGCTGGTGGCCTTGCTG
GCGCTGGTCCTGCCGGGGCAGCGAACGCGGCCGGGGCAGTGGCCGGGGATCGCCCTGGGCGTCGCCGGGGTG
CTCTGGGCCGGGCATGCGGCGCTGGCGCTGGGGCGGGCGCCGGGCTGGGCCTACGGCCTGCCGCTGCTGGGC
ATGCTGGCGCTGGCCCTGGCCACCCTGTTGCAGAAGCGCTGGGACGATGCGCCGGGATCGCTGGCCGTGGTG
CTGTTCGTGCAGATCGGCGCCGCGCTACCGGCGTTCGCCGGCCTGGCGCTGGCGGAGGGTAGCCTGCGGCCG
CCGCTGTCCGGCGGATTCCTGTTCGGGCTCGCCTGGCTGGTGCTGCTGCCCACCTTCGGCGGCTACGGCCTG
TACTGGCTGGGCCTGCGCCATCTTTCCGCACAGGGCGGCAGCGCGGCGCTGTACCTGAGCCCGGCGCTGACC
CTGCTATGGGCGCACTGGATGTTCGCCGAGCCGCTGACACCCATGCTGCTGGGTGGTCTGCTGCTGTCGCTG
GCCGGCCTCGGCTGGCTGTATCGCGCCGAGCGTCGCTAG
Translation:
MRATTCTPRAMPGATRLLAVQLGMVLAWSSGFVGYRYAMEQAPVFLTSFWRFAVCLALLLPFAWAGLRRLSA
RQWRRQALIGALAYAGYIAPIAKAIELGVSPGVAALMADLLPLLVALLALVLPGQRTRPGQWPGIALGVAGV
LWAGHAALALGRAPGWAYGLPLLGMLALALATLLQKRWDDAPGSLAVVLFVQIGAALPAFAGLALAEGSLRP
PLSGGFLFGLAWLVLLPTFGGYGLYWLGLRHLSAQGGSAALYLSPALTLLWAHWMFAEPLTPMLLGGLLLSL
AGLGWLYRAERR*
AnnotationID:2467GeneID:2459
AnnotatorUID: diggins
Modification Date/Time: 2005-01-28 13:01:16
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57148.1| (AE016869) membrane protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 310

 Score =  225 bits (573), Expect = 3e-58
 Identities = 130/288 (45%), Positives = 172/288 (59%), Gaps = 1/288 (0%)

>dbj|BAB51202.1| (AP003004) putative integral membrane protein [Mesorhizobium loti]
          Length = 308

 Score =  197 bits (501), Expect = 6e-50
 Identities = 117/268 (43%), Positives = 152/268 (56%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37480




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2459_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2459
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4127
                           PA1265_tr
                           translation of PA1265
                           300
                           99.99
                           99.99
                           0
                           1553.0
     

     
     
123026
                           gb|AAG04654.1|AE004556_4
                           (AE004556) hypothetical protein PA1265 [Pseudomonas aeruginosa PAO1]
                           300
                           99.99
                           99.99
                           0
                           1553.0
     

     
     
123027
                           gb|AAO57148.1|
                           (AE016869) membrane protein [Pseudomonas syringae pv. tomato str. DC3000]
                           314
                           42.03
                           56.68
                           18
                           569.0
     

     
     
123029
                           emb|CAC49823.1|
                           (AL603647) conserved hypothetical membrane protein [Sinorhizobium meliloti]
                           306
                           39.21
                           53.26
                           14
                           486.0
     

     
     
123028
                           dbj|BAB51202.1|
                           (AP003004) putative integral membrane protein [Mesorhizobium loti]
                           327
                           37.00
                           47.70
                           46
                           488.0
     

     






      

          
GC ORFID: 45461How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1265Glimmer Score: 

          
Start: 693258Stop: 694160

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1265 translation of PA1265Homolog Bit Score 602.0

          
Other Homologs:  t_PA1265 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCGACCACCTGCACCCCGCGAGCGATGCCCGGGGCGACCCGCCTGCTGGCCGTGCAACTGGGCATG 
GTACTGGCCTGGAGTTCCGGCTTCGTCGGCTACCGCTATGCCATGGAACAGGCGCCGGTGTTCCTCACCAGC 
TTCTGGCGTTTCGCCGTCTGCCTGGCGCTGCTGCTGCCCTTCGCCTGGGCCGGGCTGCGCCGGTTGTCGGCG 
CGCCAGTGGCGGCGCCAGGCGCTGATCGGGGCGTTGGCCTACGCGGGCTACATAGCGCCGATCGCCAAGGCC 
ATCGAACTCGGCGTCTCGCCGGGCGTGGCGGCGCTGATGGCCGACCTGTTGCCGCTGCTGGTGGCCTTGCTG 
GCGCTGGTCCTGCCGGGGCAGCGAACGCGGCCGGGGCAGTGGCCGGGGATCGCCCTGGGCGTCGCCGGGGTG 
CTCTGGGCCGGGCATGCGGCGCTGGCGCTGGGGCGGGCGCCGGGCTGGGCCTACGGCCTGCCGCTGCTGGGC 
ATGCTGGCGCTGGCCCTGGCCACCCTGTTGCAGAAGCGCTGGGACGATGCGCCGGGATCGCTGGCCGTGGTG 
CTGTTCGTGCAGATCGGCGCCGCGCTACCGGCGTTCGCCGGCCTGGCGCTGGCGGAGGGTAGCCTGCGGCCG 
CCGCTGTCCGGCGGATTCCTGTTCGGGCTCGCCTGGCTGGTGCTGCTGCCCACCTTCGGCGGCTACGGCCTG 
TACTGGCTGGGCCTGCGCCATCTTTCCGCACAGGGCGGCAGCGCGGCGCTGTACCTGAGCCCGGCGCTGACC 
CTGCTATGGGCGCACTGGATGTTCGCCGAGCCGCTGACACCCATGCTGCTGGGTGGTCTGCTGCTGTCGCTG 
GCCGGCCTCGGCTGGCTGTATCGCGCCGAGCGTCGCTAG