ViewGene
Locus Name:
GeneID:
Location:

GeneID:2458
TrivialName: PA14_50670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50670
PAO1 Ortholog Locus:PA1060
Sequence Length:906
Protein Length:301
Start: 4502000
Stop: 4501095
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04449.1|AE004538_1 (AE004538) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/301 (99%), Positives = 300/301 (99%)
Sequence:
TTGACTCGGACGCGCTGGTTCGCCCTGGCCTGCCTGATCCTGGCGATGGCGCTGTGGGGCAGTTCGTACGTG
GTGCTGAAGGTCGCTTTCCGCGAACTGCCGCCGCTCTGGGTGATCTTCGGTCGCATGGCCCTCGGCAGCCTG
GTGTTCCTCGTCGCCTGGCGCTGGCGGGGACGCATCGACTACCGCTCGGGCGACTGGAAGTACCTGCTCGGC
CTGGCCGTCTGCGAACCCTGCCTGTACTTCCTCTGCGAATCCTTCGCCCTGCAATACACCAGCGCGGCCCAG
GCCGGGATGATCACCGCGCTGCTGCCGTTGCTGGTGGCGGTGGGGGCCTGGTTGCTGCTGCACGAACGGATC
GGCCGGATGACCTGGATCGGCTTCGGCCTGGCGGTGCTCGGTTCGATCTGGCTGAGCCTCGCCGGCGAGCCC
GACCTGCACGCGCCGCAGCCGCTGCTGGGCAACTTCTTCGAACTTCTCGCGATGCTCTGCGCCACCGGCTAT
ACCCTGTTGCTGAAGCACCTGTCGGCGCGCTACTCGGCATTCGCCCTGACCGCCATGCAGGCCTTCGTCGGC
ACGTTGTTCTTCCTGCCGCTGGCGCTGGCCAGCGCCGACCTGCCGAGCCAGCCCAGCGCGCTGGGGATCCAG
GCGGTGGTGTATCTCGGCGTGGTGGTCACGGTGGGCGCCTACGGCCTGTACAACTTCGGCGTCGGTCGACTG
CCGGCCAGCCAGGCCTCGGGCTTCATCAACCTGATCCCGGTCTTCACCCTGGTATTCGCCGCGCTGTTCCTC
GGCGAAACCCTCAACGGCCCGCAGATGCTCGCTGCCGGCCTGGTCTTCATCGGCGTCGCCATCAGCCAGTGG
CGCAGCGCTCCGCCGCCGCCTCCGGCCGGCGTCCTGAACTGA
Translation:
MTRTRWFALACLILAMALWGSSYVVLKVAFRELPPLWVIFGRMALGSLVFLVAWRWRGRIDYRSGDWKYLLG
LAVCEPCLYFLCESFALQYTSAAQAGMITALLPLLVAVGAWLLLHERIGRMTWIGFGLAVLGSIWLSLAGEP
DLHAPQPLLGNFFELLAMLCATGYTLLLKHLSARYSAFALTAMQAFVGTLFFLPLALASADLPSQPSALGIQ
AVVYLGVVVTVGAYGLYNFGVGRLPASQASGFINLIPVFTLVFAALFLGETLNGPQMLAAGLVFIGVAISQW
RSAPPPPPAGVLN*
AnnotationID:2466GeneID:2458
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1060
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5006, Predicted permease, DMT superfamily. Score: 63.4, 4e-11
pfam00892, DUF6, Integral membrane protein DUF6. Score: 56.8, 3e-09
COG0697, RhaT, Permeases of the drug/metabolite transporter. Score: 54.1, 2e-08






   
Genomic Context:






   
Comment:


















    ReferenceID:14595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2458
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4126
                           PA1060_tr
                           translation of PA1060
                           301
                           99.66
                           99.66
                           0
                           1553.0
     

     
     
123023
                           gb|AAG04449.1|AE004538_1
                           (AE004538) hypothetical protein PA1060 [Pseudomonas aeruginosa PAO1]
                           301
                           99.33
                           99.66
                           0
                           1551.0
     

     
     
123025
                           emb|CAE10034.1|
                           (BX571659) conserved hypothetical protein [Wolinella succinogenes]
                           311
                           45.01
                           61.09
                           22
                           631.0
     

     
     
123024
                           gb|AAQ58810.1|
                           (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           313
                           44.72
                           57.50
                           38
                           638.0
     

     






      

          
GC ORFID: 45460How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1060Glimmer Score: 

          
Start: 451908Stop: 452813

          
Length: 906


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1060 translation of PA1060Homolog Bit Score 602.0

          
Other Homologs:  t_PA1060 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGACTCGGACGCGCTGGTTCGCCCTGGCCTGCCTGATCCTGGCGATGGCGCTGTGGGGCAGTTCGTACGTG 
GTGCTGAAGGTCGCTTTCCGCGAACTGCCGCCGCTCTGGGTGATCTTCGGTCGCATGGCCCTCGGCAGCCTG 
GTGTTCCTCGTCGCCTGGCGCTGGCGGGGACGCATCGACTACCGCTCGGGCGACTGGAAGTACCTGCTCGGC 
CTGGCCGTCTGCGAACCCTGCCTGTACTTCCTCTGCGAATCCTTCGCCCTGCAATACACCAGCGCGGCCCAG 
GCCGGGATGATCACCGCGCTGCTGCCGTTGCTGGTGGCGGTGGGGGCCTGGTTGCTGCTGCACGAACGGATC 
GGCCGGATGACCTGGATCGGCTTCGGCCTGGCGGTGCTCGGTTCGATCTGGCTGAGCCTCGCCGGCGAGCCC 
GACCTGCACGCGCCGCAGCCGCTGCTGGGCAACTTCTTCGAACTTCTCGCGATGCTCTGCGCCACCGGCTAT 
ACCCTGTTGCTGAAGCACCTGTCGGCGCGCTACTCGGCATTCGCCCTGACCGCCATGCAGGCCTTCGTCGGC 
ACGTTGTTCTTCCTGCCGCTGGCGCTGGCCAGCGCCGACCTGCCGAGCCAGCCCAGCGCGCTGGGGATCCAG 
GCGGTGGTGTATCTCGGCGTGGTGGTCACGGTGGGCGCCTACGGCCTGTACAACTTCGGCGTCGGTCGACTG 
CCGGCCAGCCAGGCCTCGGGCTTCATCAACCTGATCCCGGTCTTCACCCTGGTATTCGCCGCGCTGTTCCTC 
GGCGAAACCCTCAACGGCCCGCAGATGCTCGCTGCCGGCCTGGTCTTCATCGGCGTCGCCATCAGCCAGTGG 
CGCAGCGCTCCGCCGCCGCCTCCGGCCGGCGTCCTGAACTGA