ViewGene
Locus Name:
GeneID:
Location:

GeneID:2457
TrivialName: PA14_55180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55180
PAO1 Ortholog Locus:PA0705
Sequence Length:900
Protein Length:299
Start: 4901189
Stop: 4902088
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04094.1|AE004506_4 (AE004506) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 297/299 (99%), Positives = 299/299 (100%)
Sequence:
ATGATTGAAGAAGCCACTTCCAGCAAGCACTCAGGCACGACGGACGCCCCGCTGGTATCCGTCGTAGCGCCC
TGCTTCAACGCGGAAAAGTACCTGGAAGAAGCCCTGCGCAGCATCTACGAGCAGGACTACCCGAATTTCGAA
GTGATCATCGTCGACGACGGTTCCACCGACAACAGCTACGCCATGCTGGAGCAGTTGCAGAAAGTCCACGGT
TTCCAGCTCTACCGCCAGCAGAACCAGGGCGTCAGCGCAGCGCTGAACTTCGGTCTGCAACACGCCCGCGGC
GACTACGTAGCCACGCCGGACCTGGACGACATCATGCTGCCGCACTCGTTGAGCGTGCGCGCCGCGTACCTC
GACCAGCACCCGGAGGTCGGCTGCGTCGGCGCCCTGGTGATCTACATCGACAGCGAAGGCCAGGAAACCAAG
CGGCAGAACGGCAATCGCATCCGCCAGCTGGACTTCGACTACTTGCTCGGCAACGCCTACGTCTGCGGCGCC
CCGATGTCCCTGTACCGCATGGAGGCCCTGCGCGCAGCCGGCTTCTACGATCCCGAGATCAAGGTGCAGGAC
TTCCAGATGACCCTGCGCATCGCCAGCCAGGGCTACCAGATCCACAAGCTGCCGGTGCTGGTCACCCGCTAC
CGGCGCCACCCCGACAACCTGTCGCGGCGCTACAAGGTGCTGCTCGATGCCGACCTGCGCACCATCGCGCCC
TACCAGTCGCATCCCGCCTACGAGCGCGGCCGCACGGAGTTGGTCAACAAGGCCCTGAAATACGCCGTGGTC
GCGGACAAGCGGCATGCCTGGCAACTGCTCCGCTCGCTGCCGCTGCGGCAGTGGAACCGTACCACCTTCCGC
CGGTTGAAGCGCTTCCTTCTCCATCACGAGAGCTGA
Translation:
MIEEATSSKHSGTTDAPLVSVVAPCFNAEKYLEEALRSIYEQDYPNFEVIIVDDGSTDNSYAMLEQLQKVHG
FQLYRQQNQGVSAALNFGLQHARGDYVATPDLDDIMLPHSLSVRAAYLDQHPEVGCVGALVIYIDSEGQETK
RQNGNRIRQLDFDYLLGNAYVCGAPMSLYRMEALRAAGFYDPEIKVQDFQMTLRIASQGYQIHKLPVLVTRY
RRHPDNLSRRYKVLLDADLRTIAPYQSHPAYERGRTELVNKALKYAVVADKRHAWQLLRSLPLRQWNRTTFR
RLKRFLLHHES*
AnnotationID:2465GeneID:2457
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:39
Gene Name:
Confidence Code:3
GeneProduct:probable glycosyl transferase
Cell Localization:()
Synonyms:PA0705, migA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00535, Glycos_transf_2, Glycosyl transferase.
COG1215, Glycosyltransferases, probably involved in cell wall biogenesis.
COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis.






   
Genomic Context:






   
Comment:


















    ReferenceID:4917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32158




  
Author/Investigator(s):
        Wang J, Lory S, Ramphal R, Jin S.





  
Title:
        Isolation and characterization of Pseudomonas aeruginosa genes inducible by respiratory mucus derived from cystic fibrosis patients.





  
PubMed:
        97126826 


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):1005-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2457
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4124
                           PA0705_tr
                           translation of PA0705
                           299
                           99.33
                           99.99
                           0
                           1551.0
     

     
     
123019
                           gb|AAG04094.1|AE004506_4
                           (AE004506) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           299
                           99.33
                           99.99
                           0
                           1551.0
     

     
     
123020
                           gb|AAC44786.1|
                           (U70729) MigA [Pseudomonas aeruginosa]
                           299
                           98.66
                           99.33
                           0
                           1542.0
     

     
     
123021
                           gb|AAO54852.1|
                           (AE016860) glycosyl transferase, group 2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           299
                           63.87
                           78.59
                           5
                           985.0
     

     
     
4125
                           PA1014_tr
                           translation of PA1014
                           334
                           49.10
                           61.67
                           39
                           815.0
     

     






      

          
GC ORFID: 45459How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0705Glimmer Score: 

          
Start: 52718Stop: 51819

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0705 translation of PA0705Homolog Bit Score 602.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4445 (ORF: BLASTX 386.0), t_PA0705 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTGAAGAAGCCACTTCCAGCAAGCACTCAGGCACGACGGACGCCCCGCTGGTATCCGTCGTAGCGCCC 
TGCTTCAACGCGGAAAAGTACCTGGAAGAAGCCCTGCGCAGCATCTACGAGCAGGACTACCCGAATTTCGAA 
GTGATCATCGTCGACGACGGTTCCACCGACAACAGCTACGCCATGCTGGAGCAGTTGCAGAAAGTCCACGGT 
TTCCAGCTCTACCGCCAGCAGAACCAGGGCGTCAGCGCAGCGCTGAACTTCGGTCTGCAACACGCCCGCGGC 
GACTACGTAGCCACGCCGGACCTGGACGACATCATGCTGCCGCACTCGTTGAGCGTGCGCGCCGCGTACCTC 
GACCAGCACCCGGAGGTCGGCTGCGTCGGCGCCCTGGTGATCTACATCGACAGCGAAGGCCAGGAAACCAAG 
CGGCAGAACGGCAATCGCATCCGCCAGCTGGACTTCGACTACTTGCTCGGCAACGCCTACGTCTGCGGCGCC 
CCGATGTCCCTGTACCGCATGGAGGCCCTGCGCGCAGCCGGCTTCTACGATCCCGAGATCAAGGTGCAGGAC 
TTCCAGATGACCCTGCGCATCGCCAGCCAGGGCTACCAGATCCACAAGCTGCCGGTGCTGGTCACCCGCTAC 
CGGCGCCACCCCGACAACCTGTCGCGGCGCTACAAGGTGCTGCTCGATGCCGACCTGCGCACCATCGCGCCC 
TACCAGTCGCATCCCGCCTACGAGCGCGGCCGCACGGAGTTGGTCAACAAGGCCCTGAAATACGCCGTGGTC 
GCGGACAAGCGGCATGCCTGGCAACTGCTCCGCTCGCTGCCGCTGCGGCAGTGGAACCGTACCACCTTCCGC 
CGGTTGAAGCGCTTCCTTCTCCATCACGAGAGCTGA