ViewGene
Locus Name:
GeneID:
Location:

GeneID:2456
TrivialName: PA14_04240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04240
PAO1 Ortholog Locus:PA0325
Sequence Length:930
Protein Length:309
Start: 380253
Stop: 379324
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03714.1|AE004470_8 (AE004470) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 302/309 (97%), Positives = 306/309 (99%)
Sequence:
ATGAGCGCCACCGGCCGACCTTCCGCGCAACAGTCGGCCGAACGCCGGCAACTGCGTCGGCGCCTGCTGCTG
AGCAGCCCGGCGATGCTGATGCTGGTGCTGTTCCTGGTGATCCCGCTAGGCATCATGTTCGCCGTGTCGATC
CAGCAGTCCGGCGACTACGGCGGGGTGAAGTGGGGCCAGCACAGCCTGGAGGCCTACCTCAATTTCCTCTGG
GAACGCGACCTGGACGACAGCCTGGTGTTCAACGCCGACTACCTGGGCATCTTCCAGCGCTCGTTCTGGCTG
TCGCTGCTGACCACCCTCGGCTGCCTGGCACTCGGCTTCCCCACCGCGCTGTACCTGGCGTTGCAGCCGGAA
CGCCGGCGCAACCTGCTGCTGTTCCTGGTCACCGTGCCGTTCTGGACCAACCTGCTGGTGCGGGTCTACGCC
TGGATCCTGCTGCTGCGCAACGGCGGGCTGGTGGACGCCGGCCTGCAAGGCATCGGCCTGACCGACACCGGG
CTGGGGCTGCTCTATACCGATAACGCGGTGATCATCGGCCTCCTTTATACCTACCTGCCGTTCATGGTGCTG
CCGATCTACACCAGCCTGGAAAAGATGGACTGGCGCCTGGTGGAGGCGACATTCGACCTCGGCGCCAACCGC
TGGAAAGCGCTGCGCCGGGTGATCGTGCCGCTGGCGATGCCGGGGATAGTCGCCGGCTGCATCCTGGTATTC
ATCCCGGCCCTGGGCAGCTACATCATTCCGGAATTGCTCGGCGGCGGTAAGGCGCTGATGATCGGCAACCTG
ATCCAGCTGCAATTCGGTACCGCGCACAACTGGCCCTTCGGCGCCGCCCTTTCGTTCGCCCTGCTGGCCTTC
GTCCTGCTGGCGATGCTGATCCACAGCCTGCGCTTCCGGGCCAACGCCGGCGGAGGCCAGCCATGA
Translation:
MSATGRPSAQQSAERRQLRRRLLLSSPAMLMLVLFLVIPLGIMFAVSIQQSGDYGGVKWGQHSLEAYLNFLW
ERDLDDSLVFNADYLGIFQRSFWLSLLTTLGCLALGFPTALYLALQPERRRNLLLFLVTVPFWTNLLVRVYA
WILLLRNGGLVDAGLQGIGLTDTGLGLLYTDNAVIIGLLYTYLPFMVLPIYTSLEKMDWRLVEATFDLGANR
WKALRRVIVPLAMPGIVAGCILVFIPALGSYIIPELLGGGKALMIGNLIQLQFGTAHNWPFGAALSFALLAF
VLLAMLIHSLRFRANAGGGQP*
AnnotationID:2464GeneID:2456
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0325
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative spermidine/putrescine ABC transporter
Functional Category Confidence Code:5
COGs:COG1176
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB49908.1| (AP003000) ABC transporter, permease [Mesorhizobium loti]
          Length = 306

 Score =  295 bits (754), Expect = 3e-79
 Identities = 146/287 (50%), Positives = 209/287 (72%), Gaps = 2/287 (0%)








 
Structural Features:
COG1176, PotB, ABC-type spermidine/putrescine transport system, 
permease component I 
[Amino acid transport and metabolism]
CD-Length = 287 residues,  97.9% aligned
Score =  261 bits (669), Expect = 7e-71
Identities = 139/291 (47%), Positives = 185/291 (63%), Gaps = 10/291 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22061




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33671




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2456_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2456
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4121
                           PA0325_tr
                           translation of PA0325
                           309
                           97.73
                           99.02
                           0
                           1554.0
     

     
     
122968
                           gb|AAG03714.1|AE004470_8
                           (AE004470) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           309
                           97.73
                           99.02
                           0
                           1554.0
     

     
     
4122
                           PA0205_tr
                           translation of PA0205
                           310
                           53.22
                           70.00
                           5
                           799.0
     

     
     
122969
                           gb|AAG03594.1|AE004458_9
                           (AE004458) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           310
                           53.22
                           70.00
                           5
                           799.0
     

     
     
122970
                           dbj|BAB49908.1|
                           (AP003000) ABC transporter, permease [Mesorhizobium loti]
                           313
                           48.56
                           68.69
                           11
                           752.0
     

     






      

          
GC ORFID: 45458How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0325Glimmer Score: 

          
Start: 6181595Stop: 6180666

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0325 translation of PA0325Homolog Bit Score 603.0

          
Other Homologs:  t_PA0205 (ORF: BLASTX 315.0), t_PA3608 (ORF: BLASTX 225.0), t_PA0325 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCACCGGCCGACCTTCCGCGCAACAGTCGGCCGAACGCCGGCAACTGCGTCGGCGCCTGCTGCTG 
AGCAGCCCGGCGATGCTGATGCTGGTGCTGTTCCTGGTGATCCCGCTAGGCATCATGTTCGCCGTGTCGATC 
CAGCAGTCCGGCGACTACGGCGGGGTGAAGTGGGGCCAGCACAGCCTGGAGGCCTACCTCAATTTCCTCTGG 
GAACGCGACCTGGACGACAGCCTGGTGTTCAACGCCGACTACCTGGGCATCTTCCAGCGCTCGTTCTGGCTG 
TCGCTGCTGACCACCCTCGGCTGCCTGGCACTCGGCTTCCCCACCGCGCTGTACCTGGCGTTGCAGCCGGAA 
CGCCGGCGCAACCTGCTGCTGTTCCTGGTCACCGTGCCGTTCTGGACCAACCTGCTGGTGCGGGTCTACGCC 
TGGATCCTGCTGCTGCGCAACGGCGGGCTGGTGGACGCCGGCCTGCAAGGCATCGGCCTGACCGACACCGGG 
CTGGGGCTGCTCTATACCGATAACGCGGTGATCATCGGCCTCCTTTATACCTACCTGCCGTTCATGGTGCTG 
CCGATCTACACCAGCCTGGAAAAGATGGACTGGCGCCTGGTGGAGGCGACATTCGACCTCGGCGCCAACCGC 
TGGAAAGCGCTGCGCCGGGTGATCGTGCCGCTGGCGATGCCGGGGATAGTCGCCGGCTGCATCCTGGTATTC 
ATCCCGGCCCTGGGCAGCTACATCATTCCGGAATTGCTCGGCGGCGGTAAGGCGCTGATGATCGGCAACCTG 
ATCCAGCTGCAATTCGGTACCGCGCACAACTGGCCCTTCGGCGCCGCCCTTTCGTTCGCCCTGCTGGCCTTC 
GTCCTGCTGGCGATGCTGATCCACAGCCTGCGCTTCCGGGCCAACGCCGGCGGAGGCCAGCCATGA