ViewGene
Locus Name:
GeneID:
Location:

GeneID:2455
TrivialName: PA14_02870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02870
PAO1 Ortholog Locus:PA0233
Sequence Length:942
Protein Length:313
Start: 252660
Stop: 253601
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03622.1|AE004461_5 (AE004461) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 313/313 (100%), Positives = 313/313 (100%)
Sequence:
ATGAGCCGCAAGCTGCATATCCACGCGCCCGCGATCCACTACTTCGACATGGTGCGCCGCTGCCATTCGATC
CGCGAAGCCGCGCGACGCCTGAACGTCGCCTCGTCGGCGGTGAACCGGCAGATCCTCAAGCTGGAGGACGAG
ATCGGCGCGCCGCTGTTCGACCGCCTGCCCGGGGGCCTGCGCCTGACCGGAGCCGGGGAGATCTTCGCGCGC
CACGTCACCGTGGTCCTGCAGGACATGGAGCGCGTGCGTTCCGAACTGGACGCGCTGCAAGGCCTGCGCACC
GGCCATGTGGAGATCGCCACCATCGAGGCGGTGACCAGCGACCTGCTGCCCTGCGTGCTCAAGGCGATGCGC
GAACGCTACCCGGACATCACCGTCGGCGTCACCCTGCTCGGTTCCCAGGCGATACCCGAGGCGGTGAGCAGC
GGCGCGGTCGACCTCGGCCTGGCCTTCGCCCTGCCGCGCAGCGCCGACCTGCAACAGGTCAGCGTCGGCCAT
TTCCGCCTCGGTGCCATCGTCTCCCCGCAGCACCCGTTGGCGCGACACCAGGCCATCGCCTTCGCCGATTGC
GTCGAACATGGCCTGATCATGGCCAAGAGCGAGCTGTCCATCCATCACCTGCTGGCGCCGCTCCAGCGCCGT
TTGCGCGAACCGCGCCGGGCGGTGCTGGAGAGCAGCTCCCTGGAGCTGTCGCGACAACTGGCGCGGCGCGGG
CTCGGCGTCGCCTTCCAGACCCGCCTGGGGATCGAGGCCGACATCGCCCAGGGCGAGTTGCGCTTCCTGCCG
CTGAAAGACAATGGCGGCATCCACAGCGACCTCGGCCTCTACGTGCGTACCGGCCGCTACCTGCCGGTGGCG
GTGGACGCCCTGGCCCGGCAGATCGCCGAGGAAGTGCGCCTGCGCGAGCGCGAGGAAGCGCGCCTGAACGAG
GCCTGA
Translation:
MSRKLHIHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTGAGEIFAR
HVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPDITVGVTLLGSQAIPEAVSS
GAVDLGLAFALPRSADLQQVSVGHFRLGAIVSPQHPLARHQAIAFADCVEHGLIMAKSELSIHHLLAPLQRR
LREPRRAVLESSSLELSRQLARRGLGVAFQTRLGIEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVA
VDALARQIAEEVRLREREEARLNEA*
AnnotationID:2463GeneID:2455
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:20
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0233
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC49038.1| (AP005948) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 312

 Score =  261 bits (667), Expect = 4e-69
 Identities = 146/305 (47%), Positives = 201/305 (65%), Gaps = 3/305 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  112 bits (281), Expect = 4e-26
Identities = 89/293 (30%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score =  111 bits (278), Expect = 1e-25
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 1/210 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4913




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33589




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2455_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2455
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4120
                           PA0233_tr
                           translation of PA0233
                           313
                           99.99
                           99.99
                           0
                           1556.0
     

     
     
122966
                           gb|AAG03622.1|AE004461_5
                           (AE004461) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           313
                           99.99
                           99.99
                           0
                           1556.0
     

     
     
122967
                           dbj|BAC49038.1|
                           (AP005948) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           320
                           46.25
                           63.43
                           15
                           669.0
     

     






      

          
GC ORFID: 45457How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0233Glimmer Score: 

          
Start: 6054001Stop: 6054942

          
Length: 942


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0233 translation of PA0233Homolog Bit Score 603.0

          
Other Homologs:  t_PA0233 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCAAGCTGCATATCCACGCGCCCGCGATCCACTACTTCGACATGGTGCGCCGCTGCCATTCGATC 
CGCGAAGCCGCGCGACGCCTGAACGTCGCCTCGTCGGCGGTGAACCGGCAGATCCTCAAGCTGGAGGACGAG 
ATCGGCGCGCCGCTGTTCGACCGCCTGCCCGGGGGCCTGCGCCTGACCGGAGCCGGGGAGATCTTCGCGCGC 
CACGTCACCGTGGTCCTGCAGGACATGGAGCGCGTGCGTTCCGAACTGGACGCGCTGCAAGGCCTGCGCACC 
GGCCATGTGGAGATCGCCACCATCGAGGCGGTGACCAGCGACCTGCTGCCCTGCGTGCTCAAGGCGATGCGC 
GAACGCTACCCGGACATCACCGTCGGCGTCACCCTGCTCGGTTCCCAGGCGATACCCGAGGCGGTGAGCAGC 
GGCGCGGTCGACCTCGGCCTGGCCTTCGCCCTGCCGCGCAGCGCCGACCTGCAACAGGTCAGCGTCGGCCAT 
TTCCGCCTCGGTGCCATCGTCTCCCCGCAGCACCCGTTGGCGCGACACCAGGCCATCGCCTTCGCCGATTGC 
GTCGAACATGGCCTGATCATGGCCAAGAGCGAGCTGTCCATCCATCACCTGCTGGCGCCGCTCCAGCGCCGT 
TTGCGCGAACCGCGCCGGGCGGTGCTGGAGAGCAGCTCCCTGGAGCTGTCGCGACAACTGGCGCGGCGCGGG 
CTCGGCGTCGCCTTCCAGACCCGCCTGGGGATCGAGGCCGACATCGCCCAGGGCGAGTTGCGCTTCCTGCCG 
CTGAAAGACAATGGCGGCATCCACAGCGACCTCGGCCTCTACGTGCGTACCGGCCGCTACCTGCCGGTGGCG 
GTGGACGCCCTGGCCCGGCAGATCGCCGAGGAAGTGCGCCTGCGCGAGCGCGAGGAAGCGCGCCTGAACGAG 
GCCTGA