ViewGene
Locus Name:
GeneID:
Location:

GeneID:2453
TrivialName: PA14_22820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22820
PAO1 Ortholog Locus:PA3200
Sequence Length:888
Protein Length:295
Start: 1981024
Stop: 1981911
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06588.1|AE004744_3 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 293/295 (99%), Positives = 294/295 (99%)
Sequence:
ATGCGTGTCGATCTGCATTGCCACAGTACCGCCTCCGATGGCGTTCTCGCGCCCGCCGCCCTGGTGCAGCGG
GCCCACGAGAAAGGCGTCGGGCTGCTGGCGCTGACCGACCACGACACCCTGGAAGGCTTGCCGGAAGCCCAC
CAGGCGGCCGCTCGACTCAGTATCGAACTGGTCAACGGCGTCGAGCTGTCCTGCACCTGGGGTGGCGCCACC
ATCCATGTGCTGGGCTACGGTTTCGACCTCGACGCCGCTCCCCTGCGCCAGGCCACTGAAGCCCTGCACCGC
GGCCGCTGGGCGCGCGCCGAGGAAATCGACCGACGGCTGGCGGCCAAGGGTATGCCCGGGGCGCTGGAGGGC
GCGCGGGCGATCCAGCGGGCCCTGGGCGACAGCGGCAACGCGCCGGCGCGGCCGCATTTCGCCGAGTTCCTG
GTCCAGGGCGGCTGGGTCAAGGATCGCGCCGACGCGTTCCGCAAATGGCTGGGGGCCGGCAAGCTGGGAGAC
GTCAAGCAGCACTGGCCGACCCTGGAGGAAGTGGTCGGCTGCCTGCGCGAGGCGCGCGCCTGGATCAGCCTG
GCGCACCCGTACCATTATGATTTCACCCGGACCAAGCGCCGGCGCCTGGTCGCCGACTTTCTCCAGGCCGGT
GGACACGCCATCGAGGTGGTCAATGGGGTGCAGCCGGCCGAACAGGTCGGTACCCTGTCGATCCTGGCCCGC
GAGTTCGGCCTGATGGTCACCGCCGGCAGCGATTTCCACGCGCCGGGCGACTGGTCCGAACTGGGCATGTAC
CGTGCGGTTCCAGAGGACCTTCCGGCCATGTGGCCGCGTTTCGCCAGGCATTTTCGCGATACCGAACGTCAT
TCCGAAGCCAAGGGGGCCGAATGA
Translation:
MRVDLHCHSTASDGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLSIELVNGVELSCTWGGAT
IHVLGYGFDLDAAPLRQATEALHRGRWARAEEIDRRLAAKGMPGALEGARAIQRALGDSGNAPARPHFAEFL
VQGGWVKDRADAFRKWLGAGKLGDVKQHWPTLEEVVGCLREARAWISLAHPYHYDFTRTKRRRLVADFLQAG
GHAIEVVNGVQPAEQVGTLSILAREFGLMVTAGSDFHAPGDWSELGMYRAVPEDLPAMWPRFARHFRDTERH
SEAKGAE*
AnnotationID:2461GeneID:2453
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:55
Gene Name:
Confidence Code:3
GeneProduct:putative PHP domain protein
Cell Localization:()
Synonyms:yciV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0613
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55330.1| (AE016862) PHP domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 287

 Score =  449 bits (1156), Expect = e-126
 Identities = 213/278 (76%), Positives = 240/278 (86%)

>gb|AAN70074.1|AE016647_4 (AE016790) trpH family protein [Pseudomonas putida KT2440]
          Length = 286

 Score =  446 bits (1146), Expect = e-124
 Identities = 209/279 (74%), Positives = 235/279 (84%)








 
Structural Features:
COG0613, Predicted metal-dependent phosphoesterases (PHP family)
(Polymerase and Histidinol Phosphatase)
CD-Length = 258 residues,  98.1% aligned
Score =  222 bits (566), Expect = 5e-59
Identities = 111/261 (42%), Positives = 138/261 (52%), Gaps = 9/261 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32343




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2453_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2453
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4118
                           PA3200_tr
                           translation of PA3200
                           295
                           99.32
                           99.66
                           0
                           1555.0
     

     
     
122941
                           gb|AAG06588.1|AE004744_3
                           (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           295
                           99.32
                           99.66
                           0
                           1555.0
     

     
     
122942
                           gb|AAO55330.1|
                           (AE016862) PHP domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           72.88
                           82.71
                           8
                           1154.0
     

     
     
122943
                           gb|AAN70074.1|AE016647_4
                           (AE016790) trpH family protein [Pseudomonas putida KT2440]
                           295
                           71.18
                           80.33
                           9
                           1138.0
     

     
     
122944
                           emb|CAB83925.1|
                           (AL162753) hypothetical protein NMA0635 [Neisseria meningitidis Z2491]
                           297
                           40.74
                           54.54
                           21
                           559.0
     

     






      

          
GC ORFID: 45455How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3200Glimmer Score: 

          
Start: 2972907Stop: 2972020

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3200 translation of PA3200Homolog Bit Score 603.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2042 (ORF: BLASTX 447.0), t_PA3200 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGTCGATCTGCATTGCCACAGTACCGCCTCCGATGGCGTTCTCGCGCCCGCCGCCCTGGTGCAGCGG 
GCCCACGAGAAAGGCGTCGGGCTGCTGGCGCTGACCGACCACGACACCCTGGAAGGCTTGCCGGAAGCCCAC 
CAGGCGGCCGCTCGACTCAGTATCGAACTGGTCAACGGCGTCGAGCTGTCCTGCACCTGGGGTGGCGCCACC 
ATCCATGTGCTGGGCTACGGTTTCGACCTCGACGCCGCTCCCCTGCGCCAGGCCACTGAAGCCCTGCACCGC 
GGCCGCTGGGCGCGCGCCGAGGAAATCGACCGACGGCTGGCGGCCAAGGGTATGCCCGGGGCGCTGGAGGGC 
GCGCGGGCGATCCAGCGGGCCCTGGGCGACAGCGGCAACGCGCCGGCGCGGCCGCATTTCGCCGAGTTCCTG 
GTCCAGGGCGGCTGGGTCAAGGATCGCGCCGACGCGTTCCGCAAATGGCTGGGGGCCGGCAAGCTGGGAGAC 
GTCAAGCAGCACTGGCCGACCCTGGAGGAAGTGGTCGGCTGCCTGCGCGAGGCGCGCGCCTGGATCAGCCTG 
GCGCACCCGTACCATTATGATTTCACCCGGACCAAGCGCCGGCGCCTGGTCGCCGACTTTCTCCAGGCCGGT 
GGACACGCCATCGAGGTGGTCAATGGGGTGCAGCCGGCCGAACAGGTCGGTACCCTGTCGATCCTGGCCCGC 
GAGTTCGGCCTGATGGTCACCGCCGGCAGCGATTTCCACGCGCCGGGCGACTGGTCCGAACTGGGCATGTAC 
CGTGCGGTTCCAGAGGACCTTCCGGCCATGTGGCCGCGTTTCGCCAGGCATTTTCGCGATACCGAACGTCAT 
TCCGAAGCCAAGGGGGCCGAATGA