ViewGene
Locus Name:
GeneID:
Location:

GeneID:2451
TrivialName: PA14_27960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27960
PAO1 Ortholog Locus:PA2796
Sequence Length:924
Protein Length:307
Start: 2420673
Stop: 2419750
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06184.1|AE004707_3 (AE004707) transaldolase [Pseudomonas aeruginosa PAO1]
Identities = 307/307 (100%), Positives = 307/307 (100%)
Sequence:
ATGACTTCGAAGCTGGAACAACTCAAGCAATACACCACGGTGGTCGCCGACACCGGCGACTTCGATGCCATT
GCCCGCCTGAAGCCGGTGGACGCCACCACCAACCCGTCGCTGCTGCTCAAGGCCGCTGCCCTGCCGCGCTAC
GCCGAGCACCTTCGACAGGCTACCGCGGGTAGCGGCGGCGACGCCGGACTGGCTTGCGACCGCTTCGCCGTG
GCAGTCGGCAAGGACATCCTCGGAGTCATTCCCGGACGTATTTCCACCGAAGTCGACGCGCGCCTGTCGTTC
GACAGCGAGGCCACCCTCGCCCGCGCCCACCGCCTGATCGAGCTGTACGACGAACAGGGCATCGACCGCGAG
CGGGTGCTGATCAAGATCGCCTCCACCTGGGAAGGAATCCGCGCCGCCGAGATTCTGGAACGCGAGGGCATC
CAGACCAACCTGACCCTGCTGTTCTCCTTCGCCCAGGCGGTGGCCTGCGCCGACGCCGGGGTGTTCCTCATC
TCGCCGTTCGTCGGGCGCATCTACGACTGGTACAAGAAGAGCGAGAATCGCGACTACGCCGGCGCCGAGGAT
CCCGGCGTGCAGTCGGTCTCGCGCATCTATCGCTACTACAAGGCCAACGGCTACAAGACGGTGGTGATGGGC
GCCAGCTTCCGCAATCTCGGCCAGATCGAGCAACTGGCCGGCTGCGACCGCCTGACCATCAGTCCCGACCTG
CTGCAACAACTGGCTGACGCCCAGGGCGAGCTGCCGCGCCTGCTGCTGCCGGGCGAAGGCGAGCCGCGCCAG
GTGCTCGACGAGAGCGCTTTCCGTTGGCAGATGAACGAGGACGCCATGGCCACCGAAAAGCTGGCCGAAGGC
ATCCGCCTGTTCGCACGCGACCAGGAAAAGCTCGAATACCAGTTGGCGACCCGCCACTGA
Translation:
MTSKLEQLKQYTTVVADTGDFDAIARLKPVDATTNPSLLLKAAALPRYAEHLRQATAGSGGDAGLACDRFAV
AVGKDILGVIPGRISTEVDARLSFDSEATLARAHRLIELYDEQGIDRERVLIKIASTWEGIRAAEILEREGI
QTNLTLLFSFAQAVACADAGVFLISPFVGRIYDWYKKSENRDYAGAEDPGVQSVSRIYRYYKANGYKTVVMG
ASFRNLGQIEQLAGCDRLTISPDLLQQLADAQGELPRLLLPGEGEPRQVLDESAFRWQMNEDAMATEKLAEG
IRLFARDQEKLEYQLATRH*
AnnotationID:2459GeneID:2451
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 17:05:07
Gene Name:tal
Confidence Code:2
GeneProduct:transaldolase
Cell Localization:()
Synonyms:talB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:dihydroxyacetone transferase
Functional Category Confidence Code:5
COGs:cd00957,pfam00923,cd00439
Secondary Functional Category(ies):carbon compound catabolism
EC Number:2.2.1.2
Status:ACTIVE
Pathway:
Pentose phosphate pathway; nonoxidative part.
Homology:
>gb|AAN67781.1|AE016409_7 (AE016782) transaldolase [Pseudomonas putida KT2440]
          Length = 308

 Score =  465 bits (1197), Expect = e-130
 Identities = 239/307 (77%), Positives = 265/307 (86%), Gaps = 1/307 (0%)

>gb|AAO55636.1| (AE016863) transaldolase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 309

 Score =  437 bits (1124), Expect = e-122
 Identities = 225/307 (73%), Positives = 257/307 (83%), Gaps = 1/307 (0%)

>gb|AAL45258.1| (AE009374) transaldolase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 321

 Score =  368 bits (944), Expect = e-101
 Identities = 191/304 (62%), Positives = 232/304 (76%), Gaps = 9/304 (2%)
Structural Features:
cd00957, Transaldolase_TalAB, Transaldolases including both TalA and TalB.
CD-Length = 313 residues,  99.0% aligned
Score =  442 bits (1139), Expect = 2e-125

pfam00923, Transaldolase, Transaldolase.
CD-Length = 286 residues, 100.0% aligned
Score =  295 bits (756), Expect = 4e-81
Identities = 155/299 (51%), Positives = 187/299 (62%), Gaps = 21/299 (7%)

cd00439, Transaldolase, Transaldolase.
CD-Length = 294 residues, 100.0% aligned
Score =  234 bits (598), Expect = 1e-62
Genomic Context:






   
Comment:


















    ReferenceID:4905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36259




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2451_cdd.html


    		




 
URL:

















    ReferenceID:36397




  
Author/Investigator(s):
        Kohler U, Cerff R, Brinkmann H.





  
Title:
        Transaldolase genes from the cyanobacteria Anabaena variabilis and Synechocystis sp. PCC 6803: comparison with other eubacterial and eukaryotic homologues.




  
PubMed:
        8616240


MedLine:
        




    
Source:
Plant Mol Biol. 1996 Jan;30(1):213-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8616240

















    ReferenceID:36398




  
Author/Investigator(s):
        Sprenger GA, Schorken U, Sprenger G, Sahm H.





  
Title:
        Transaldolase B of Escherichia coli K-12: cloning of its gene, talB, and characterization of the enzyme from recombinant strains.




  
PubMed:
        7592346


MedLine:
        




    
Source:
J Bacteriol. 1995 Oct;177(20):5930-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7592346









           
Homologs By Global Alignment 

           

       



     
Gene ID:2451
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4109
                           PA2796_tr
                           translation of PA2796
                           307
                           99.99
                           99.99
                           0
                           1554.0
     

     
     
122742
                           gb|AAG06184.1|AE004707_3
                           (AE004707) transaldolase [Pseudomonas aeruginosa PAO1]
                           307
                           99.99
                           99.99
                           0
                           1554.0
     

     
     
122743
                           gb|AAN67781.1|AE016409_7
                           (AE016782) transaldolase [Pseudomonas putida KT2440]
                           308
                           77.59
                           86.03
                           1
                           1197.0
     

     
     
122744
                           gb|AAO55636.1|
                           (AE016863) transaldolase [Pseudomonas syringae pv. tomato str. DC3000]
                           309
                           72.81
                           83.17
                           2
                           1125.0
     

     
     
122762
                           gb|AAC22779.1|
                           (U32792) transaldolase B (talB) [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20]
                           317
                           60.56
                           74.76
                           10
                           902.0
     

     






      

          
GC ORFID: 45453How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2796Glimmer Score: 

          
Start: 2533253Stop: 2534176

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2796 translation of PA2796Homolog Bit Score 603.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene513 (ORF: BLASTX 429.0), t_PA2796 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTCGAAGCTGGAACAACTCAAGCAATACACCACGGTGGTCGCCGACACCGGCGACTTCGATGCCATT 
GCCCGCCTGAAGCCGGTGGACGCCACCACCAACCCGTCGCTGCTGCTCAAGGCCGCTGCCCTGCCGCGCTAC 
GCCGAGCACCTTCGACAGGCTACCGCGGGTAGCGGCGGCGACGCCGGACTGGCTTGCGACCGCTTCGCCGTG 
GCAGTCGGCAAGGACATCCTCGGAGTCATTCCCGGACGTATTTCCACCGAAGTCGACGCGCGCCTGTCGTTC 
GACAGCGAGGCCACCCTCGCCCGCGCCCACCGCCTGATCGAGCTGTACGACGAACAGGGCATCGACCGCGAG 
CGGGTGCTGATCAAGATCGCCTCCACCTGGGAAGGAATCCGCGCCGCCGAGATTCTGGAACGCGAGGGCATC 
CAGACCAACCTGACCCTGCTGTTCTCCTTCGCCCAGGCGGTGGCCTGCGCCGACGCCGGGGTGTTCCTCATC 
TCGCCGTTCGTCGGGCGCATCTACGACTGGTACAAGAAGAGCGAGAATCGCGACTACGCCGGCGCCGAGGAT 
CCCGGCGTGCAGTCGGTCTCGCGCATCTATCGCTACTACAAGGCCAACGGCTACAAGACGGTGGTGATGGGC 
GCCAGCTTCCGCAATCTCGGCCAGATCGAGCAACTGGCCGGCTGCGACCGCCTGACCATCAGTCCCGACCTG 
CTGCAACAACTGGCTGACGCCCAGGGCGAGCTGCCGCGCCTGCTGCTGCCGGGCGAAGGCGAGCCGCGCCAG 
GTGCTCGACGAGAGCGCTTTCCGTTGGCAGATGAACGAGGACGCCATGGCCACCGAAAAGCTGGCCGAAGGC 
ATCCGCCTGTTCGCACGCGACCAGGAAAAGCTCGAATACCAGTTGGCGACCCGCCACTGA