ViewGene
Locus Name:
GeneID:
Location:

GeneID:2450
TrivialName: PA14_29440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29440
PAO1 Ortholog Locus:PA2681
Sequence Length:930
Protein Length:309
Start: 2553829
Stop: 2552900
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06069.1|AE004696_3 (AE004696) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 305/308 (99%), Positives = 307/308 (99%)
Sequence:
ATGCAACCGTTCGACAGCCGGCAGGCCGATGAAGTCGCCACGCTCCTGGCCCTGGCCGAGCACGGTTCGTTC
GCCGCCGCCGACCGCGCCCTGCAACGACATCCCTCGGTGCTCTCGAAGCGGCTCGGCGCACTGGAGCGCCGC
CTCGGCATCCGCCTGGTCGAACGCACCACCCGGCAACTGCGCTTCACCGATGAAGGCGAGCGCCTGGCGAGC
CGCTTCCGCCAGGCCGTCGACCTGCTCGACGAGGCCGAGCACGAAGCCAGCCTGGGCGCCGCGCAACTGCGC
GGACGCCTGCGCATCGCCCTGCCATCGGCGATGGGCCGGCTCTGGCTCGGTCCGCTGCTGGCGGAGTTCGCC
CTGGCGCATCCGCAGGTGGTGCTGGAAACCGACTATTCGGAGCGCTTCGTCGACATCATCGCGGAAGGCTTC
GACCTCGCGATCCGGGTCGGCGAACTGGCCGACAGCCGCCTGGTGGCCAGGCGGCTGTGCGCCCACCGGCGC
ATCCTCGGCGCCGCTCCCGACTACCTGGAGCGGCATGGGGTACCGCGTATCCCGGCCGACCTGGCGGCACAC
AATTGCCTCGGCTTCAGCGGACTGCACTCGTACCCGGAATGGAAGCTGACCCGCCAGGACGAACAGCAGCCC
GTGCGGGTACGCGGCTCGATGGTCAGCAACGACAACGAGGCCCTGCTCTGCGCCGCACGCCAGGGCCTGGGC
ATCTTCGCCGCCGGCGAGTGGCTGATGAGCCGCGACCTCGAAGCCGGCAGGCTGGTACGGGTGCTGCCGGAG
TGGCAACTGGACGCCGACGCCGGCGTCTACCTGGTGCGCCCCTCGGCGCGCTACGCCACGGCGGCGGCCAGC
GCGTTCCGCCAATGGGTGGAAGCGCGGTTCGCCGCGGGCCCGCCCTGGCAGCGCCAGCGGGACTGA
Translation:
MQPFDSRQADEVATLLALAEHGSFAAADRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGERLAS
RFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLETDYSERFVDIIAEGF
DLAIRVGELADSRLVARRLCAHRRILGAAPDYLERHGVPRIPADLAAHNCLGFSGLHSYPEWKLTRQDEQQP
VRVRGSMVSNDNEALLCAARQGLGIFAAGEWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAAS
AFRQWVEARFAAGPPWQRQRD*
AnnotationID:2458GeneID:2450
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:49
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69205.1|AE016555_3 (AE016787) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 306

 Score =  409 bits (1052), Expect = e-114
 Identities = 204/306 (66%), Positives = 245/306 (80%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  131 bits (330), Expect = 9e-32
Identities = 100/300 (33%), Positives = 137/300 (45%), Gaps = 11/300 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36321




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2450_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2450
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4108
                           PA2681_tr
                           translation of PA2681
                           309
                           98.70
                           99.35
                           0
                           1554.0
     

     
     
122736
                           gb|AAG06069.1|AE004696_3
                           (AE004696) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           309
                           98.70
                           99.35
                           0
                           1554.0
     

     
     
122737
                           gb|AAN69205.1|AE016555_3
                           (AE016787) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           309
                           66.01
                           79.28
                           3
                           1052.0
     

     
     
122738
                           dbj|BAB49182.1|
                           (AP002998) probable transcriptional regulator [Mesorhizobium loti]
                           311
                           44.05
                           60.12
                           16
                           674.0
     

     
     
122739
                           emb|CAC45348.1|
                           (AL591784) HYPOTHETICAL TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
                           309
                           37.86
                           54.36
                           11
                           515.0
     

     






      

          
GC ORFID: 45452How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2681Glimmer Score: 

          
Start: 2400097Stop: 2401026

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2681 translation of PA2681Homolog Bit Score 603.0

          
Other Homologs:  t_PA2681 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCGTTCGACAGCCGGCAGGCCGATGAAGTCGCCACGCTCCTGGCCCTGGCCGAGCACGGTTCGTTC 
GCCGCCGCCGACCGCGCCCTGCAACGACATCCCTCGGTGCTCTCGAAGCGGCTCGGCGCACTGGAGCGCCGC 
CTCGGCATCCGCCTGGTCGAACGCACCACCCGGCAACTGCGCTTCACCGATGAAGGCGAGCGCCTGGCGAGC 
CGCTTCCGCCAGGCCGTCGACCTGCTCGACGAGGCCGAGCACGAAGCCAGCCTGGGCGCCGCGCAACTGCGC 
GGACGCCTGCGCATCGCCCTGCCATCGGCGATGGGCCGGCTCTGGCTCGGTCCGCTGCTGGCGGAGTTCGCC 
CTGGCGCATCCGCAGGTGGTGCTGGAAACCGACTATTCGGAGCGCTTCGTCGACATCATCGCGGAAGGCTTC 
GACCTCGCGATCCGGGTCGGCGAACTGGCCGACAGCCGCCTGGTGGCCAGGCGGCTGTGCGCCCACCGGCGC 
ATCCTCGGCGCCGCTCCCGACTACCTGGAGCGGCATGGGGTACCGCGTATCCCGGCCGACCTGGCGGCACAC 
AATTGCCTCGGCTTCAGCGGACTGCACTCGTACCCGGAATGGAAGCTGACCCGCCAGGACGAACAGCAGCCC 
GTGCGGGTACGCGGCTCGATGGTCAGCAACGACAACGAGGCCCTGCTCTGCGCCGCACGCCAGGGCCTGGGC 
ATCTTCGCCGCCGGCGAGTGGCTGATGAGCCGCGACCTCGAAGCCGGCAGGCTGGTACGGGTGCTGCCGGAG 
TGGCAACTGGACGCCGACGCCGGCGTCTACCTGGTGCGCCCCTCGGCGCGCTACGCCACGGCGGCGGCCAGC 
GCGTTCCGCCAATGGGTGGAAGCGCGGTTCGCCGCGGGCCCGCCCTGGCAGCGCCAGCGGGACTGA