ViewGene
Locus Name:
GeneID:
Location:

GeneID:2449
TrivialName: PA14_34410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34410
PAO1 Ortholog Locus:PA2339
Sequence Length:933
Protein Length:310
Start: 3061107
Stop: 3060175
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05727.1|AE004660_3 (AE004660) probable binding-protein-dependent maltose/mannitol transport protein [Pseudomonas aeruginosa PAO1]
Identities = 308/310 (99%), Positives = 309/310 (99%)
Sequence:
ATGAACACCTCGGCCCTCGATACCCCGCTCCCGGCCCGTCCCGCCCACCGTCGCCTCCAGCGCCGCCGGCGC
GGACCCGGCTGGCTCCTGGTCAGCCCCTCGGTGGCGCTGCTGCTGTTGTGGATGATCGTGCCCCTGGGCATG
ACCCTGTATTTCTCGCTGATCCGCTACAACCTGCTGTATCCCGGCGAGAATGCCTTCGTCGGCGTGGAGAAC
TTCACCTTCTTCGTCACCGACGCCGGCTTCCTGCCCGGCGCGCTGAACACCCTGCTGCTGGTGGGCAGCGTG
CTGGCGATCAGCGTGGCGTTCGGCGTGCTCATCGCCGCGCTGCTGGAGGCCGGCGAGTTCTTCGGTCGCGGC
GCGGTGCGGGTGTTGCTGATCTCGCCGTTCTTCATCATGCCGACGGTGAGCGCGCTGCTCTGGAAGAACCTG
ATCTTCCACCCGGTCTCGGGCATCCTCGCCGCCGTCTGGCGCCTGTTCGGCGCCGAGCCGGTGGATTGGCTG
GCGCACTATCCGCTGCTGTCGATCATCCTCATCGTCTCCTGGCAATGGCTGCCCTTCGCCATCCTCATCCTG
ATGACCGCCATGCAGTCCCTCGACCAGGAGCAGAAGGAGGCCGCCCGCCTCGACGGCGCCGGTCCGCTGGCG
ATCTTCTGGCACCTGACCCTGCCGCACCTGGCGCGGCCCATCGCGGTGGTGCTGATGATCGAGACGATCTTC
CTGCTCTCGGTGTTCGCCGAGATCTTCACCACCACCAGCGGCGGCCCCGGCTACGAATCGACCAACCTCGCC
TACCTGATCTACAACCAGGCGCTGCTGCAGTTCGATGTCGGCATGGCCTCGGCCGGGGGCCTGATCGCGGTG
CTGATCGCCAATATCGCCGCCATCGTGCTGGTGCGGATGATCGGCAAGAACCTTACCGAGCGCAGCTGA
Translation:
MNTSALDTPLPARPAHRRLQRRRRGPGWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFVGVEN
FTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNL
IFHPVSGILAAVWRLFGAEPVDWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLA
IFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLAYLIYNQALLQFDVGMASAGGLIAV
LIANIAAIVLVRMIGKNLTERS*
AnnotationID:2457GeneID:2449
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 15:03:15
Gene Name:
Confidence Code:3
GeneProduct:putative binding-protein-dependent maltose/mannitol transport protein
Cell Localization:()
Synonyms:PA2339, mtlF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:mannitol ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG1175
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC04469.1| (AF007800) MtlF [Pseudomonas fluorescens]
          Length = 296

 Score =  516 bits (1328), Expect = e-146
 Identities = 255/290 (87%), Positives = 274/290 (94%)

>gb|AAO56207.1| (AE016865) mannitol ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 310

 Score =  508 bits (1307), Expect = e-143
 Identities = 256/310 (82%), Positives = 279/310 (90%)

>gb|AAL45242.1| (AE009373) ABC transporter, membrane spanning protein
           [sorbitol/mannitol] [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 338

 Score =  346 bits (887), Expect = 1e-94
 Identities = 173/286 (60%), Positives = 219/286 (76%), Gaps = 1/286 (0%)






 
Structural Features:
COG1175, UgpA, ABC-type sugar transport systems, permease components 
[Carbohydrate transport and metabolism]
CD-Length = 295 residues,  99.7% aligned
Score =  188 bits (478), Expect = 1e-48
Identities = 106/297 (35%), Positives = 162/297 (54%), Gaps = 6/297 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4901




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32461




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2449_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2449
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4107
                           PA2339_tr
                           translation of PA2339
                           310
                           99.35
                           99.67
                           0
                           1556.0
     

     
     
122723
                           gb|AAG05727.1|AE004660_3
                           (AE004660) probable binding-protein-dependent maltose/mannitol transport protein [Pseudomonas aeruginosa PAO1]
                           310
                           99.35
                           99.67
                           0
                           1556.0
     

     
     
122724
                           gb|AAC04469.1|
                           (AF007800) MtlF [Pseudomonas fluorescens]
                           310
                           83.87
                           90.00
                           14
                           1334.0
     

     
     
122725
                           gb|AAO56207.1|
                           (AE016865) mannitol ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           82.58
                           90.00
                           0
                           1307.0
     

     
     
122726
                           emb|CAD15850.1|
                           (AL646068) PROBABLE TRANSMEMBRANE ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           319
                           56.42
                           72.41
                           11
                           939.0
     

     






      

          
GC ORFID: 45451How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2339Glimmer Score: 

          
Start: 1892809Stop: 1893741

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2339 translation of PA2339Homolog Bit Score 603.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3066 (ORF: BLASTX 519.0), t_PA2339 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACACCTCGGCCCTCGATACCCCGCTCCCGGCCCGTCCCGCCCACCGTCGCCTCCAGCGCCGCCGGCGC 
GGACCCGGCTGGCTCCTGGTCAGCCCCTCGGTGGCGCTGCTGCTGTTGTGGATGATCGTGCCCCTGGGCATG 
ACCCTGTATTTCTCGCTGATCCGCTACAACCTGCTGTATCCCGGCGAGAATGCCTTCGTCGGCGTGGAGAAC 
TTCACCTTCTTCGTCACCGACGCCGGCTTCCTGCCCGGCGCGCTGAACACCCTGCTGCTGGTGGGCAGCGTG 
CTGGCGATCAGCGTGGCGTTCGGCGTGCTCATCGCCGCGCTGCTGGAGGCCGGCGAGTTCTTCGGTCGCGGC 
GCGGTGCGGGTGTTGCTGATCTCGCCGTTCTTCATCATGCCGACGGTGAGCGCGCTGCTCTGGAAGAACCTG 
ATCTTCCACCCGGTCTCGGGCATCCTCGCCGCCGTCTGGCGCCTGTTCGGCGCCGAGCCGGTGGATTGGCTG 
GCGCACTATCCGCTGCTGTCGATCATCCTCATCGTCTCCTGGCAATGGCTGCCCTTCGCCATCCTCATCCTG 
ATGACCGCCATGCAGTCCCTCGACCAGGAGCAGAAGGAGGCCGCCCGCCTCGACGGCGCCGGTCCGCTGGCG 
ATCTTCTGGCACCTGACCCTGCCGCACCTGGCGCGGCCCATCGCGGTGGTGCTGATGATCGAGACGATCTTC 
CTGCTCTCGGTGTTCGCCGAGATCTTCACCACCACCAGCGGCGGCCCCGGCTACGAATCGACCAACCTCGCC 
TACCTGATCTACAACCAGGCGCTGCTGCAGTTCGATGTCGGCATGGCCTCGGCCGGGGGCCTGATCGCGGTG 
CTGATCGCCAATATCGCCGCCATCGTGCTGGTGCGGATGATCGGCAAGAACCTTACCGAGCGCAGCTGA