ViewGene
Locus Name:
GeneID:
Location:

GeneID:2447
TrivialName: PA14_53020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53020
PAO1 Ortholog Locus:PA0869
Sequence Length:933
Protein Length:310
Start: 4700957
Stop: 4701889
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04258.1|AE004521_9 (AE004521) D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 310/310 (100%), Positives = 310/310 (100%)
Sequence:
GTGAGAAACCGTCTCCTGTCACTGGTCACCCTGTTCCTGTCCCTCAGCGTTGCCACCGCGGTATCCGCCTCC
CCGCCGCCCAAGGCCGGGCTGCCGCTGCAACAGGAGCTGGCGTCGGGCAGCGCGCTGGTTACCGACCAGAAC
ACCGGCAAGGTGCTCTACTCGCGCAACCCCGACCTGGTGGTGCCGATCGCCTCGATCACCAAGCTGATGACC
GCCATGGTCGTGCTCGACTCGAAACTGCCGCTGGACGAGGTACTGCCGATCGCCATCAGCGAGACCAGCGAA
ATGCGCGGGGTGTTTTCCCGAGTGCGGGTCGGCAGCCAGATCAGCCGCCGGGACATGCTCCTGCTCGCCCTG
ATGTCCTCGGAGAACCGCGCCGCCGCCAGCCTCGCGCAGAACTATCCGGGCGGCAAGAACGCCTTCGTCAAG
GCGATGAACGCCAAGGCCCACGCCCTCGGAATGAAGAACACCCGCTACGTCGAGCCGACCGGGCTGTCGCTG
CACAACGTCTCCACCGCTCGCGACCTCACCCGCCTGCTGGTGGCCAGCCGGCAATACCCGCTGCTCAGCCAG
TGGAGCACCACTCCGGAGAAGACCGTGGCCTTCCGCCACCCCAACTACACCCTGGGCTTCCGCAATACCAAC
CACCTGATCAACAACAAGACCTGGAACATCCAGTTGACCAAGACCGGCTTCACCAACGAAGCAGGTCACTGC
CTGGTGATGCGCACCACGATCAACCGCAGCCCGGTCAATCTGGTGGTGCTGGACGCCTTCGGCAAGTACACC
CACTTCGCCGACGCCACCCGCCTGCGACGCTGGCTGGAAACCGGCCAGGTCACTGCGATCCCGGCCGCGGCC
AAGGCCTATCGCCTGCAACGCGACCGCGAGCGCGGCCTCGGCCAGCCGGTGGCCCAGGCCGTACGCTGA
Translation:
MRNRLLSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDLVVPIASITKLMT
AMVVLDSKLPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDMLLLALMSSENRAAASLAQNYPGGKNAFVK
AMNAKAHALGMKNTRYVEPTGLSLHNVSTARDLTRLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTN
HLINNKTWNIQLTKTGFTNEAGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRWLETGQVTAIPAAA
KAYRLQRDRERGLGQPVAQAVR*
AnnotationID:2455GeneID:2447
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 11:11:24
Gene Name:pbpG
Confidence Code:1
GeneProduct:D-alanyl-D-alanine-endopeptidase
Cell Localization:(8) Periplasmic
Synonyms:PA0869
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:penicillin-binding protein 7; D-ala-D-ala-carboxypeptidase
Functional Category Confidence Code:5
COGs:pfam00768, COG1686
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00768, Peptidase_S11, D-alanyl-D-alanine carboxypeptidase.  Score: 260, 3e-70
COG1686, DacC, D-alanyl-D-alanine carboxypeptidase. Score: 246, 7e-66






   
Genomic Context:






   
Comment:


















    ReferenceID:14593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31990




  
Author/Investigator(s):
        Song J, Xie G, Elf PK, Young KD, Jensen RA.





  
Title:
        Comparative analysis of Pseudomonas aeruginosa penicillin-binding protein 7 in the context of its membership in the family of low-molecular-mass PBPs.





  
PubMed:
        98240234


MedLine:
        




    
Source:
Microbiology. 1998 Apr;144 ( Pt 4):975-83.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2447
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4105
                           PA0869_tr
                           translation of PA0869
                           310
                           99.99
                           99.99
                           0
                           1555.0
     

     
     
122689
                           gb|AAG04258.1|AE004521_9
                           (AE004521) D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1]
                           310
                           99.67
                           99.99
                           0
                           1552.0
     

     
     
122690
                           gb|AAC46341.1|
                           (U62582) penicillin-binding protein 5 [Pseudomonas aeruginosa]
                           311
                           99.35
                           99.67
                           1
                           1542.0
     

     
     
122691
                           gb|AAM86564.1|AE013903_1
                           (AE013903) penicillin-binding protein 7 [Yersinia pestis KIM]
                           317
                           64.98
                           76.65
                           13
                           1015.0
     

     
     
122692
                           emb|CAC90017.1|
                           (AJ414146) penicillin-binding protein 7 precursor [Yersinia pestis CO92]
                           317
                           64.98
                           76.65
                           13
                           1015.0
     

     






      

          
GC ORFID: 45449How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0869Glimmer Score: 

          
Start: 252950Stop: 252018

          
Length: 933


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0869 translation of PA0869Homolog Bit Score 603.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene149 (ORF: BLASTX 365.0), t_PA0869 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGAAACCGTCTCCTGTCACTGGTCACCCTGTTCCTGTCCCTCAGCGTTGCCACCGCGGTATCCGCCTCC 
CCGCCGCCCAAGGCCGGGCTGCCGCTGCAACAGGAGCTGGCGTCGGGCAGCGCGCTGGTTACCGACCAGAAC 
ACCGGCAAGGTGCTCTACTCGCGCAACCCCGACCTGGTGGTGCCGATCGCCTCGATCACCAAGCTGATGACC 
GCCATGGTCGTGCTCGACTCGAAACTGCCGCTGGACGAGGTACTGCCGATCGCCATCAGCGAGACCAGCGAA 
ATGCGCGGGGTGTTTTCCCGAGTGCGGGTCGGCAGCCAGATCAGCCGCCGGGACATGCTCCTGCTCGCCCTG 
ATGTCCTCGGAGAACCGCGCCGCCGCCAGCCTCGCGCAGAACTATCCGGGCGGCAAGAACGCCTTCGTCAAG 
GCGATGAACGCCAAGGCCCACGCCCTCGGAATGAAGAACACCCGCTACGTCGAGCCGACCGGGCTGTCGCTG 
CACAACGTCTCCACCGCTCGCGACCTCACCCGCCTGCTGGTGGCCAGCCGGCAATACCCGCTGCTCAGCCAG 
TGGAGCACCACTCCGGAGAAGACCGTGGCCTTCCGCCACCCCAACTACACCCTGGGCTTCCGCAATACCAAC 
CACCTGATCAACAACAAGACCTGGAACATCCAGTTGACCAAGACCGGCTTCACCAACGAAGCAGGTCACTGC 
CTGGTGATGCGCACCACGATCAACCGCAGCCCGGTCAATCTGGTGGTGCTGGACGCCTTCGGCAAGTACACC 
CACTTCGCCGACGCCACCCGCCTGCGACGCTGGCTGGAAACCGGCCAGGTCACTGCGATCCCGGCCGCGGCC 
AAGGCCTATCGCCTGCAACGCGACCGCGAGCGCGGCCTCGGCCAGCCGGTGGCCCAGGCCGTACGCTGA