ViewGene
Locus Name:
GeneID:
Location:

GeneID:2446
TrivialName: PA14_06030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06030
PAO1 Ortholog Locus:PA0461
Sequence Length:888
Protein Length:295
Start: 535331
Stop: 534444
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03850.1|AE004484_2 (AE004484) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/295 (99%), Positives = 294/295 (99%)
Sequence:
ATGCGGGAACTGTTGACCGGCCTGACCAGCAGCCTTCTGCTGCTTCTCAACACGCTGATCCTGATCGGCCCG
ATGATGCTGATCGCACTGCTCAAGCTGGTGCTCCCCGGCCAGCGCCTGAAGGACCTCTGCTCCAGGGGCGTG
ATGTGGATCGCCGAGACCTGGGCGGAGATCGACAAGTGGATCTTCGCCACCTGCACGCCGACGGTCTGGGAC
GTGCGCGGCGCCGGCGACCTGCGCCAGGACACCTCGTACCTGGTGGTGAGCAACCACCAGTCCTGGGTCGAC
ATCCCCGCGTTGATCCAGGTGTTCAACCGGCGCACCCCGTACTTCAAGTTCTTCCTCAAGAAGGAGCTGATC
TGGGTGCCCTTCCTCGGCCTGGCCTGGTGGGCGCTGGAGTATCCGTTCATGAAGCGCTATTCCAAGGCCTTC
CTGGAGAAGCACCCGGAACTCAAGGGCAAGGACCTGGAGATCACCAAGGCCGCCTGCGAGAAATTCAAGCGC
ATCCCGGTGACCGTGGTGAACTACCTGGAAGGCACGCGCTTCAGCGAGCAGAAGAAGGCCCGCCAACAGTCG
CCCTATCGCCACCTGCTCAAGCCCAAGGCCGGCGGGGTGGCCTTCGTCCTCGCCGCGCTGGGCGAGCAGCTG
GACGCCCTGCTCGACGTCACCGTGGTCTACCCGAGCGACAAGGTGCCGGGATTCTGGGACCTGCTCTGCGGA
CGGGTGCCGAAGGTGATCGTCGACATCCAGACCCGGCCGATCGATCCCGCCCTGTGGCAGGGCGACTACGAG
AACGACCCGGTGTTCCGCCAGTACGTGCAGGAATGGGTCTCGCGCATGTGGGAAGAAAAGGACGAACGCATC
GCCCGCTTGCGGCAACTGCGCTGA
Translation:
MRELLTGLTSSLLLLLNTLILIGPMMLIALLKLVLPGQRLKDLCSRGVMWIAETWAEIDKWIFATCTPTVWD
VRGAGDLRQDTSYLVVSNHQSWVDIPALIQVFNRRTPYFKFFLKKELIWVPFLGLAWWALEYPFMKRYSKAF
LEKHPELKGKDLEITKAACEKFKRIPVTVVNYLEGTRFSEQKKARQQSPYRHLLKPKAGGVAFVLAALGEQL
DALLDVTVVYPSDKVPGFWDLLCGRVPKVIVDIQTRPIDPALWQGDYENDPVFRQYVQEWVSRMWEEKDERI
ARLRQLR*
AnnotationID:2454GeneID:2446
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
Cell Localization:()
Synonyms:PA0461
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53996.1| (AE016857) acyltransferase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 299

 Score =  467 bits (1202), Expect = e-131
 Identities = 221/293 (75%), Positives = 250/293 (85%), Gaps = 1/293 (0%)

>gb|AAN65963.1|AE016224_7 (AE016775) acyltransferase, putative [Pseudomonas putida KT2440]
          Length = 295

 Score =  458 bits (1179), Expect = e-128
 Identities = 218/292 (74%), Positives = 251/292 (85%), Gaps = 1/292 (0%)








 
Structural Features:
COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase 
[Lipid metabolism]
CD-Length = 255 residues, 100.0% aligned
Score =  106 bits (264), Expect = 4e-24
Identities = 57/271 (21%), Positives = 93/271 (34%), Gaps = 22/271 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33780




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2446_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2446
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4103
                           PA0461_tr
                           translation of PA0461
                           295
                           99.66
                           99.66
                           0
                           1557.0
     

     
     
122667
                           gb|AAG03850.1|AE004484_2
                           (AE004484) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           295
                           99.66
                           99.66
                           0
                           1557.0
     

     
     
122668
                           gb|AAO53996.1|
                           (AE016857) acyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           300
                           73.66
                           83.33
                           6
                           1200.0
     

     
     
122669
                           gb|AAN65963.1|AE016224_7
                           (AE016775) acyltransferase, putative [Pseudomonas putida KT2440]
                           296
                           73.64
                           84.79
                           2
                           1176.0
     

     
     
4104
                           PA0834_tr
                           translation of PA0834
                           309
                           47.57
                           61.48
                           19
                           711.0
     

     






      

          
GC ORFID: 45448How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0461Glimmer Score: 

          
Start: 6336673Stop: 6335786

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0461 translation of PA0461Homolog Bit Score 604.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5047 (ORF: BLASTX 283.0), t_PA0834 (ORF: BLASTX 279.0), t_PA0461 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGGAACTGTTGACCGGCCTGACCAGCAGCCTTCTGCTGCTTCTCAACACGCTGATCCTGATCGGCCCG 
ATGATGCTGATCGCACTGCTCAAGCTGGTGCTCCCCGGCCAGCGCCTGAAGGACCTCTGCTCCAGGGGCGTG 
ATGTGGATCGCCGAGACCTGGGCGGAGATCGACAAGTGGATCTTCGCCACCTGCACGCCGACGGTCTGGGAC 
GTGCGCGGCGCCGGCGACCTGCGCCAGGACACCTCGTACCTGGTGGTGAGCAACCACCAGTCCTGGGTCGAC 
ATCCCCGCGTTGATCCAGGTGTTCAACCGGCGCACCCCGTACTTCAAGTTCTTCCTCAAGAAGGAGCTGATC 
TGGGTGCCCTTCCTCGGCCTGGCCTGGTGGGCGCTGGAGTATCCGTTCATGAAGCGCTATTCCAAGGCCTTC 
CTGGAGAAGCACCCGGAACTCAAGGGCAAGGACCTGGAGATCACCAAGGCCGCCTGCGAGAAATTCAAGCGC 
ATCCCGGTGACCGTGGTGAACTACCTGGAAGGCACGCGCTTCAGCGAGCAGAAGAAGGCCCGCCAACAGTCG 
CCCTATCGCCACCTGCTCAAGCCCAAGGCCGGCGGGGTGGCCTTCGTCCTCGCCGCGCTGGGCGAGCAGCTG 
GACGCCCTGCTCGACGTCACCGTGGTCTACCCGAGCGACAAGGTGCCGGGATTCTGGGACCTGCTCTGCGGA 
CGGGTGCCGAAGGTGATCGTCGACATCCAGACCCGGCCGATCGATCCCGCCCTGTGGCAGGGCGACTACGAG 
AACGACCCGGTGTTCCGCCAGTACGTGCAGGAATGGGTCTCGCGCATGTGGGAAGAAAAGGACGAACGCATC 
GCCCGCTTGCGGCAACTGCGCTGA