ViewGene

Locus Name:
GeneID:
Location:

GeneID:2445
TrivialName: PA14_00400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00400
PAO1 Ortholog Locus:PA0032
Sequence Length:915
Protein Length:304
Start: 34645
Stop: 35559
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03422.1|AE004442_9 (AE004442) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%)
Sequence:
ATGGGAGAACGCCTCATGCCGCCATCCCTCGACCTGCTCCGGGTATTCGAGTCCGCCGCCCGCCAACTCAGC
TTCACCGCTGCCGCCGAGGAGCTGGGGACCACCCAGCCTGCGGTCAGCCAGCAGATCAAACGCCTGGAGAAG
GAGCTGGCGACCCCTCTGTTCCAGCGCGTTCATCGAGGCATCGTGCTCACCGACGCCGGCCAGCTCCTGCTC
CGCCACGTGGCCGCCGGCCTCGAGACGATCGATGCCGGCATCGCCGCGCTGGGCGCGCGCCAGCGCCACGAG
GTGCTCCAGGTGGCCACCGACTACGCCTTCGCCGCCTACTGGCTGATGCCGCGCCTTCCGCGCTTCCACCAG
GCCCATCCGCACCTGGACGTGAGCCTGGTGACCAGCGAGCGCGGCCTGGCCGGCCAGCGCGGCGATATCGAC
GTGGCGATCCTGTTCGGCGACGGTCGTTCCAAGCACGGCGAAGCGCACCGGCTGTTTCGCGAGGAGGTGTTC
CCGGTCTGTAGCCCGCGCCTGGTCGAGGGATTGCAGTTGCCGCTGGCCAAGGCGCACCTGGCGCGCCTGCCG
ATGCTGCATCTGAAGCCGGCGCAGCACGCCCGCTGGTTCGACTGGCCGGCATTGTTCGAAGCGTTGGCCATC
GATCGGCAGCCGATTCCGGCGGTGCTCAGCTTCGACAACTACACCTTGCTGATCCAGGCGGCCATCGCCGGC
CAGGGCGTGGCCATCGGCTGGCGCCACCTGGTCGACGGCCTGCTCGAACAGGGGCTGCTTTGCCGGCCCATT
GGCGAGAGCTGCCTGTCGCGATACGGGTACTATGCGGTATTGCCGGAGCGCAAGCGGCGCCAGCGGCTGGTC
GACGGTTTCGTCGACTGGCTGCAGGCCGAGTTGCAGGCCGGCGGCGCTTGA
Translation:
MGERLMPPSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLTDAGQLLL
RHVAAGLETIDAGIAALGARQRHEVLQVATDYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDID
VAILFGDGRSKHGEAHRLFREEVFPVCSPRLVEGLQLPLAKAHLARLPMLHLKPAQHARWFDWPALFEALAI
DRQPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLV
DGFVDWLQAELQAGGA*
AnnotationID:2453GeneID:2445
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:05
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0032
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53718.1| (AE016856) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 316

 Score =  370 bits (949), Expect = e-102
 Identities = 186/295 (63%), Positives = 223/295 (75%)

>gb|AAN65713.1|AE016197_11 (AE016774) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 299

 Score =  364 bits (935), Expect = e-100
 Identities = 189/298 (63%), Positives = 218/298 (73%), Gaps = 2/298 (0%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  140 bits (352), Expect = 2e-34
Identities = 92/304 (30%), Positives = 131/304 (43%), Gaps = 15/304 (4%)

Genomic Context:
Comment:
ReferenceID:4893
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22039
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33390
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2445_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2445

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4102 PA0032_tr translation of PA0032 304 99.67 99.67 0 1558.0
122663 gb|AAG03422.1|AE004442_9 (AE004442) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 99.67 99.67 0 1558.0
122665 gb|AAN65713.1|AE016197_11 (AE016774) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 304 62.17 71.71 5 934.0
122664 gb|AAO53718.1| (AE016856) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] 316 59.49 71.20 12 949.0
122666 gb|AAQ58372.2| (AE016912) transcription regulator protein [Chromobacterium violaceum ATCC 12472] 306 39.86 52.61 16 435.0
GC ORFID: 45447How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0032Glimmer Score:
Start: 5835982Stop: 5836896
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0032 translation of PA0032Homolog Bit Score 604.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2986 (ORF: BLASTX 379.0), t_PA0032 (ORF: GLIMMER)
GC ORF Sequence
ATGGGAGAACGCCTCATGCCGCCATCCCTCGACCTGCTCCGGGTATTCGAGTCCGCCGCCCGCCAACTCAGC
TTCACCGCTGCCGCCGAGGAGCTGGGGACCACCCAGCCTGCGGTCAGCCAGCAGATCAAACGCCTGGAGAAG
GAGCTGGCGACCCCTCTGTTCCAGCGCGTTCATCGAGGCATCGTGCTCACCGACGCCGGCCAGCTCCTGCTC
CGCCACGTGGCCGCCGGCCTCGAGACGATCGATGCCGGCATCGCCGCGCTGGGCGCGCGCCAGCGCCACGAG
GTGCTCCAGGTGGCCACCGACTACGCCTTCGCCGCCTACTGGCTGATGCCGCGCCTTCCGCGCTTCCACCAG
GCCCATCCGCACCTGGACGTGAGCCTGGTGACCAGCGAGCGCGGCCTGGCCGGCCAGCGCGGCGATATCGAC
GTGGCGATCCTGTTCGGCGACGGTCGTTCCAAGCACGGCGAAGCGCACCGGCTGTTTCGCGAGGAGGTGTTC
CCGGTCTGTAGCCCGCGCCTGGTCGAGGGATTGCAGTTGCCGCTGGCCAAGGCGCACCTGGCGCGCCTGCCG
ATGCTGCATCTGAAGCCGGCGCAGCACGCCCGCTGGTTCGACTGGCCGGCATTGTTCGAAGCGTTGGCCATC
GATCGGCAGCCGATTCCGGCGGTGCTCAGCTTCGACAACTACACCTTGCTGATCCAGGCGGCCATCGCCGGC
CAGGGCGTGGCCATCGGCTGGCGCCACCTGGTCGACGGCCTGCTCGAACAGGGGCTGCTTTGCCGGCCCATT
GGCGAGAGCTGCCTGTCGCGATACGGGTACTATGCGGTATTGCCGGAGCGCAAGCGGCGCCAGCGGCTGGTC
GACGGTTTCGTCGACTGGCTGCAGGCCGAGTTGCAGGCCGGCGGCGCTTGA