ViewGene

Locus Name:
GeneID:
Location:

GeneID:2444
TrivialName: PA14_70780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70780
PAO1 Ortholog Locus:PA5363
Sequence Length:900
Protein Length:299
Start: 6304168
Stop: 6303269
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08748.1|AE004948_4 (AE004948) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/299 (99%), Positives = 299/299 (100%)
Sequence:
ATGCTAGGGCGCCTTCTCCTTCTCTGTGGCCTGTTCGCCGCGGCAGCTCCGGCTGCGGCCCTGACCATCTAC
AAGTACACCGACGCCAATGGCGTGGTGACCTACTCCGACCGCGCCGTGGCCGGGGCGCAGGTGTTCGTCTTC
CGCGACCGGATGGTCGAGCACCTGGAACGGGAAGTGAAGCTGGAGACGAAGAAGCACGCGGGTGGCGAGACC
CTGCAGGTGCGCAACGACCTCTACGCGCCGGTCGAGGTCGAGTTGCGGATCCGCAACCCGCGCAATGCCGTC
GGGGTGCCCGACGGGCCGATTCGCTGGGTGGTCCCGGCGCGCAGCCAGATGCGCCTGGCGACCCTGGCGCCG
CGCAAGGCCGGCAAGCCGATGAGCTACACGCCGAAGCTGCGCTATGCGCTCGGCGACCCGCGCCAGCAGCCG
CTGCTCTATCGCTATCCGCTGCCCTGGCGCGGCGGGCCGTTCCGCCTGTCCCAGGGCGCCAATGGCAAGTAC
AGCCACTTCACCCCCAAGGGCCGCTACGCGATGGACATCGCCATGCCCGAGGGCACGCCGATCATCGCCGCC
CGCGGCGGCACCGTGGTGAAGATCGAGAACAACCAGAGTGGGCGCGGCAACAATCCCTCGGGCAACTTCGTC
CGCATCCTGCACGACGACGGCACCATGGGCGTCTACCTGCACCTGATGCGCCACTCGGTGCTGGTCGCCGAG
GGCCAGCGGGTCCAGGTCGGCACGCCGCTGGCGCGCTCCGGCAACACCGGCAACAGCAGCGGGCCGCACCTG
CACTTCGTGATCCAGCGCAACGTCGGCCTGGCGCTGGAGTCGATTCCCTACGACTTCGCCCAGCCGGTCGAC
AGCCTGCCGAACTTCGCCATCGTCCGCGAGCCTTGA
Translation:
MLGRLLLLCGLFAAAAPAAALTIYKYTDANGVVTYSDRAVAGAQVFVFRDRMVEHLEREVKLETKKHAGGET
LQVRNDLYAPVEVELRIRNPRNAVGVPDGPIRWVVPARSQMRLATLAPRKAGKPMSYTPKLRYALGDPRQQP
LLYRYPLPWRGGPFRLSQGANGKYSHFTPKGRYAMDIAMPEGTPIIAARGGTVVKIENNQSGRGNNPSGNFV
RILHDDGTMGVYLHLMRHSVLVAEGQRVQVGTPLARSGNTGNSSGPHLHFVIQRNVGLALESIPYDFAQPVD
SLPNFAIVREP*
AnnotationID:2452GeneID:2444
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:57
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:PA5363
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0739,pfam01551
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58899.1| (AE016875) peptidase, M23/M37 family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 268

 Score =  352 bits (903), Expect = 2e-96
 Identities = 174/265 (65%), Positives = 206/265 (77%), Gaps = 2/265 (0%)

>gb|AAN70888.1|AE016732_13 (AE016794) peptidase, M23/M37 family [Pseudomonas putida KT2440]
          Length = 298

 Score =  338 bits (866), Expect = 3e-92
 Identities = 177/295 (60%), Positives = 215/295 (72%), Gaps = 4/295 (1%)

Structural Features:
COG0739, NlpD, Membrane proteins related to metalloendopeptidases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 277 residues,  94.9% aligned
Score =  102 bits (255), Expect = 4e-23
Identities = 74/289 (25%), Positives = 108/289 (37%), Gaps = 26/289 (8%)

pfam01551, Peptidase_M37, Peptidase family M23/M37.
CD-Length = 83 residues,  98.8% aligned
Score = 76.8 bits (189), Expect = 3e-15
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Genomic Context:
Comment:
ReferenceID:4891
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22037
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34735
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2444_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2444

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4101 PA5363_tr translation of PA5363 299 99.66 99.99 0 1558.0
122660 gb|AAG08748.1|AE004948_4 (AE004948) hypothetical protein PA5363 [Pseudomonas aeruginosa PAO1] 299 99.66 99.99 0 1558.0
122662 gb|AAN70888.1|AE016732_13 (AE016794) peptidase, M23/M37 family [Pseudomonas putida KT2440] 301 59.13 71.76 5 867.0
122661 gb|AAO58899.1| (AE016875) peptidase, M23/M37 family [Pseudomonas syringae pv. tomato str. DC3000] 301 57.80 68.43 35 900.0
GC ORFID: 45446How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5363Glimmer Score:
Start: 5567857Stop: 5566958
Length: 900
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5363 translation of PA5363Homolog Bit Score 604.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4204 (ORF: BLASTX 384.0), t_PA5363 (ORF: GLIMMER)
GC ORF Sequence
ATGCTAGGGCGCCTTCTCCTTCTCTGTGGCCTGTTCGCCGCGGCAGCTCCGGCTGCGGCCCTGACCATCTAC
AAGTACACCGACGCCAATGGCGTGGTGACCTACTCCGACCGCGCCGTGGCCGGGGCGCAGGTGTTCGTCTTC
CGCGACCGGATGGTCGAGCACCTGGAACGGGAAGTGAAGCTGGAGACGAAGAAGCACGCGGGTGGCGAGACC
CTGCAGGTGCGCAACGACCTCTACGCGCCGGTCGAGGTCGAGTTGCGGATCCGCAACCCGCGCAATGCCGTC
GGGGTGCCCGACGGGCCGATTCGCTGGGTGGTCCCGGCGCGCAGCCAGATGCGCCTGGCGACCCTGGCGCCG
CGCAAGGCCGGCAAGCCGATGAGCTACACGCCGAAGCTGCGCTATGCGCTCGGCGACCCGCGCCAGCAGCCG
CTGCTCTATCGCTATCCGCTGCCCTGGCGCGGCGGGCCGTTCCGCCTGTCCCAGGGCGCCAATGGCAAGTAC
AGCCACTTCACCCCCAAGGGCCGCTACGCGATGGACATCGCCATGCCCGAGGGCACGCCGATCATCGCCGCC
CGCGGCGGCACCGTGGTGAAGATCGAGAACAACCAGAGTGGGCGCGGCAACAATCCCTCGGGCAACTTCGTC
CGCATCCTGCACGACGACGGCACCATGGGCGTCTACCTGCACCTGATGCGCCACTCGGTGCTGGTCGCCGAG
GGCCAGCGGGTCCAGGTCGGCACGCCGCTGGCGCGCTCCGGCAACACCGGCAACAGCAGCGGGCCGCACCTG
CACTTCGTGATCCAGCGCAACGTCGGCCTGGCGCTGGAGTCGATTCCCTACGACTTCGCCCAGCCGGTCGAC
AGCCTGCCGAACTTCGCCATCGTCCGCGAGCCTTGA