ViewGene
Locus Name:
GeneID:
Location:

GeneID:2441
TrivialName: PA14_49790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49790
PAO1 Ortholog Locus:PA1128
Sequence Length:912
Protein Length:303
Start: 4429186
Stop: 4428275
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04517.1|AE004543_1 (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/303 (100%), Positives = 303/303 (100%)
Sequence:
ATGCCGGCTTTCACCCGTTCCGAACTCGCCGACCTGAACGTCTTCATGACCATCGTCCGGCGCCGCAGCTTC
CGTCACTCGGCCCAGGAACTGGGTGTCAGTACCTCGGCGCTGAGCCACAGCATGCGCAACCTCGAGGCGCGG
CTCGGGGTGAAGCTGCTCAACCGTACCAGCCGTTCGGTGGTGCCGACCGATGCCGGCAGCGCGCTGGCGGCC
AAGCTGGAGGATGGTTTCCAGGTGATCGGCGAGGCGCTCGGCGAACTCGATGCCTATCGCACCTCGCCGGTG
GGCCGGCTGCGCCTGAACGTGCCGCGCGATGCCTCGCGGCTGCTGCTGGGGCCGGTCCTCAGGCGCTTCACC
GAGGCGTATCCGGACCTGCAACTGGAACTTTCGGTGGAGGACCGCATGGTCGACATCGTCGCCGACGGCTAC
GACGCCGGCATCCGTTACGGCGGCACGGTGCCCCAGGACATGGTCGCGGTGCCATTGACCGGGGAGCTGCGC
TGGGTGGTGGCCGCGTCGCCCGATTACCTGGCGCGCCACGGCGTGCCCCAGCGGCCGGACGACCTGTTGCGG
CACGCCTGCATCCGCATGCGCCTGGGCGACAACTCGTTCTACAAATGGGAACTGGGCGACGGCGAGCGGATG
GTCGAGGTCGACGTGCCCGGCCCCTTCAGCGTCAACGAAAGCAATACGGCGGTTGCCGCGGCCCTGGACGGT
GTCGGCCTGGCCTACTGCCTGGAGGTGGGAATCGCCGAGGAGCTGCGTAGCGGCCGGCTGCAACTGGTATTG
CCGGACTGGACCTCGATGGGCGCGCCGTTCTGCCTCTACTATCCGAGCCGACGCCAGCCGCAACCCGGCTTG
CGCCAACTGATGGAAATGATCCGCGGCGACTGGCTGGGACGTGCCTGA
Translation:
MPAFTRSELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAGSALAA
KLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQLELSVEDRMVDIVADGY
DAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRPDDLLRHACIRMRLGDNSFYKWELGDGERM
VEVDVPGPFSVNESNTAVAAALDGVGLAYCLEVGIAEELRSGRLQLVLPDWTSMGAPFCLYYPSRRQPQPGL
RQLMEMIRGDWLGRA*
AnnotationID:2449GeneID:2441
AnnotatorUID: danlee
Modification Date/Time: 2004-09-07 13:01:45
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA1128
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
      CD-Length = 297 residues,  96.6% aligned
      Score =  145 bits (366), Expect = 7e-36
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 108, 7e-25






   
Genomic Context:






   
Comment:


















    ReferenceID:4885




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2441
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4097
                           PA1128_tr
                           translation of PA1128
                           303
                           99.99
                           99.99
                           0
                           1557.0
     

     
     
122602
                           gb|AAG04517.1|AE004543_1
                           (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.99
                           99.99
                           0
                           1557.0
     

     
     
122603
                           gb|AAM55010.1|
                           (U80928) unknown [Rhizobium etli]
                           307
                           49.51
                           66.44
                           10
                           769.0
     

     
     
122604
                           gb|AAO56360.1|
                           (AE016866) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           306
                           46.07
                           64.70
                           5
                           697.0
     

     
     
122605
                           gb|AAM43390.1|
                           (AE012543) transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           304
                           43.75
                           58.55
                           2
                           610.0
     

     






      

          
GC ORFID: 45443How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1128Glimmer Score: 

          
Start: 524722Stop: 525633

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1128 translation of PA1128Homolog Bit Score 604.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6026 (ORF: BLASTX 216.0), psyr_15may02_Scaffold11_revised_gene1868 (ORF: BLASTX 208.0), t_PA2220 (ORF: BLASTX 205.0), t_PA1128 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCTTTCACCCGTTCCGAACTCGCCGACCTGAACGTCTTCATGACCATCGTCCGGCGCCGCAGCTTC 
CGTCACTCGGCCCAGGAACTGGGTGTCAGTACCTCGGCGCTGAGCCACAGCATGCGCAACCTCGAGGCGCGG 
CTCGGGGTGAAGCTGCTCAACCGTACCAGCCGTTCGGTGGTGCCGACCGATGCCGGCAGCGCGCTGGCGGCC 
AAGCTGGAGGATGGTTTCCAGGTGATCGGCGAGGCGCTCGGCGAACTCGATGCCTATCGCACCTCGCCGGTG 
GGCCGGCTGCGCCTGAACGTGCCGCGCGATGCCTCGCGGCTGCTGCTGGGGCCGGTCCTCAGGCGCTTCACC 
GAGGCGTATCCGGACCTGCAACTGGAACTTTCGGTGGAGGACCGCATGGTCGACATCGTCGCCGACGGCTAC 
GACGCCGGCATCCGTTACGGCGGCACGGTGCCCCAGGACATGGTCGCGGTGCCATTGACCGGGGAGCTGCGC 
TGGGTGGTGGCCGCGTCGCCCGATTACCTGGCGCGCCACGGCGTGCCCCAGCGGCCGGACGACCTGTTGCGG 
CACGCCTGCATCCGCATGCGCCTGGGCGACAACTCGTTCTACAAATGGGAACTGGGCGACGGCGAGCGGATG 
GTCGAGGTCGACGTGCCCGGCCCCTTCAGCGTCAACGAAAGCAATACGGCGGTTGCCGCGGCCCTGGACGGT 
GTCGGCCTGGCCTACTGCCTGGAGGTGGGAATCGCCGAGGAGCTGCGTAGCGGCCGGCTGCAACTGGTATTG 
CCGGACTGGACCTCGATGGGCGCGCCGTTCTGCCTCTACTATCCGAGCCGACGCCAGCCGCAACCCGGCTTG 
CGCCAACTGATGGAAATGATCCGCGGCGACTGGCTGGGACGTGCCTGA