ViewGene
Locus Name:
GeneID:
Location:

GeneID:2440
TrivialName: PA14_54830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54830
PAO1 Ortholog Locus:PA0730
Sequence Length:903
Protein Length:300
Start: 4859110
Stop: 4860012
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04119.1|AE004508_4 (AE004508) probable transferase [Pseudomonas aeruginosa PAO1]
Identities = 295/300 (98%), Positives = 299/300 (99%)
Sequence:
ATGAGGCCGGAAACAGCCATCATCGAGATCCACGGGCAATACAGGATTCACACCGAGTTCTACGGCAACCCC
TCGGCGCAGCAGACCATCATCCTGGTCAACGGCTCGCTGTCGACCACAGCGTCCTTCGCCCAGACCGTGAAG
TACCTGCAGCCGCATTACAACGTGGTGCTCTACGACCAGCCGTATGCCGGCCAGTCCAAACCCCATAACGAA
AACCGCACGCCGATCAGCAAGGAATGCGAGGCCAGGATCCTGCTGGAACTGATCGAACGCTTCCGCGCCGAC
GTGGTGATGTCGTTCTCGTGGGGCGGCGTCGCCACCCTGCTGGCCCTGGCGCAGCGTCCCGGACGGATCCGC
AGGGCGGTGGTCAACTCATTCTCGCCTCAGCTCAACCCGGCCATGCTCGACTACCTGCATCGCGGCCTCGAC
TACCTCGCCGCCTGCGATCGCACCCAGGTCGGCAACCTGGTCAACGAAACCATCGGCCGCTACCTGCCGCAG
TTGTTCAAGCGCTACAACTTCCGCCACGTCAGCAGCCTGGACGAGCACGAATACCACCAGATGCACTTCCAT
ATCCGCGAAGTGCTGCGCCTGAACGCCGATAGCTATACCGAGAGCTTCGCCGGTATCGAGATCCCGGTGCTG
TTCATGAACGGCGAGCTGGACATCTACACCACGCCCCACGAAGCCCGCCAGTTCGGCCAACTGATCCGCGGC
GCGGAATTTCACACCATCCGCAATGCCGGCCACTTCATCGACGTCGAGCACAAGGCCGCCTGGCAACAGACC
CAGGACGCCCTGCTGGCCTTCCTCCGCCCGCAGCGCACGCAGCCGCTCAACCCGATCTACCGCCCCCAGCCC
AACGGCGCCAGCGTCCCCCTCGCCGCCCTCGCCAGCTAA
Translation:
MRPETAIIEIHGQYRIHTEFYGNPSAQQTIILVNGSLSTTASFAQTVKYLQPHYNVVLYDQPYAGQSKPHNE
NRTPISKECEARILLELIERFRADVVMSFSWGGVATLLALAQRPGRIRRAVVNSFSPQLNPAMLDYLHRGLD
YLAACDRTQVGNLVNETIGRYLPQLFKRYNFRHVSSLDEHEYHQMHFHIREVLRLNADSYTESFAGIEIPVL
FMNGELDIYTTPHEARQFGQLIRGAEFHTIRNAGHFIDVEHKAAWQQTQDALLAFLRPQRTQPLNPIYRPQP
NGASVPLAALAS*
AnnotationID:2448GeneID:2440
AnnotatorUID: danlee
Modification Date/Time: 2004-03-24 18:06:16
Gene Name:
Confidence Code:3
GeneProduct:putative transferase
Cell Localization:()
Synonyms:PA0730
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
identical to PA0730 of PAO1.






 
Structural Features:
COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta 
hydrolase superfamily) [General function prediction only]
  CD-Length = 282 residues,  81.9% aligned
  Score = 56.6 bits (134), Expect = 5e-09







   
Genomic Context:






   
Comment:


















    ReferenceID:4883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22029




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2440
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4095
                           PA0730_tr
                           translation of PA0730
                           300
                           98.33
                           99.66
                           0
                           1557.0
     

     
     
122586
                           gb|AAG04119.1|AE004508_4
                           (AE004508) probable transferase [Pseudomonas aeruginosa PAO1]
                           300
                           98.33
                           99.66
                           0
                           1557.0
     

     
     
122587
                           gb|AAF61903.1|AF209711_1
                           (AF209711) transacylase PhaG [Pseudomonas aeruginosa]
                           300
                           98.33
                           99.66
                           0
                           1557.0
     

     
     
122592
                           gb|AAF89663.1|AF169252_1
                           (AF169252) transacylase PhaG [Pseudomonas oleovorans]
                           300
                           58.33
                           74.33
                           5
                           897.0
     

     
     
122588
                           gb|AAM64206.2|AF516488_1
                           (AF516488) hydroxyacyl-ACP:CoA transacylase PhaG [Pseudomonas stutzeri]
                           300
                           58.00
                           74.00
                           5
                           895.0
     

     






      

          
GC ORFID: 45442How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0730Glimmer Score: 

          
Start: 94797Stop: 93895

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0730 translation of PA0730Homolog Bit Score 604.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1930 (ORF: BLASTX 292.0), t_PA3479 (ORF: BLASTX 238.0), t_PA0730 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGCCGGAAACAGCCATCATCGAGATCCACGGGCAATACAGGATTCACACCGAGTTCTACGGCAACCCC 
TCGGCGCAGCAGACCATCATCCTGGTCAACGGCTCGCTGTCGACCACAGCGTCCTTCGCCCAGACCGTGAAG 
TACCTGCAGCCGCATTACAACGTGGTGCTCTACGACCAGCCGTATGCCGGCCAGTCCAAACCCCATAACGAA 
AACCGCACGCCGATCAGCAAGGAATGCGAGGCCAGGATCCTGCTGGAACTGATCGAACGCTTCCGCGCCGAC 
GTGGTGATGTCGTTCTCGTGGGGCGGCGTCGCCACCCTGCTGGCCCTGGCGCAGCGTCCCGGACGGATCCGC 
AGGGCGGTGGTCAACTCATTCTCGCCTCAGCTCAACCCGGCCATGCTCGACTACCTGCATCGCGGCCTCGAC 
TACCTCGCCGCCTGCGATCGCACCCAGGTCGGCAACCTGGTCAACGAAACCATCGGCCGCTACCTGCCGCAG 
TTGTTCAAGCGCTACAACTTCCGCCACGTCAGCAGCCTGGACGAGCACGAATACCACCAGATGCACTTCCAT 
ATCCGCGAAGTGCTGCGCCTGAACGCCGATAGCTATACCGAGAGCTTCGCCGGTATCGAGATCCCGGTGCTG 
TTCATGAACGGCGAGCTGGACATCTACACCACGCCCCACGAAGCCCGCCAGTTCGGCCAACTGATCCGCGGC 
GCGGAATTTCACACCATCCGCAATGCCGGCCACTTCATCGACGTCGAGCACAAGGCCGCCTGGCAACAGACC 
CAGGACGCCCTGCTGGCCTTCCTCCGCCCGCAGCGCACGCAGCCGCTCAACCCGATCTACCGCCCCCAGCCC 
AACGGCGCCAGCGTCCCCCTCGCCGCCCTCGCCAGCTAA