ViewGene
Locus Name:
GeneID:
Location:

GeneID:2438
TrivialName: PA14_72750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72750
PAO1 Ortholog Locus:PA5513
Sequence Length:879
Protein Length:292
Start: 6479530
Stop: 6480408
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08898.1|AE004964_1 (AE004964) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/292 (98%), Positives = 289/292 (98%)
Sequence:
ATGTCGCTATCCCCCTGGTCCCATTCCTGCTCCGCCGGTTTCACCCTGCGCGGCTGGCGCAGCGAACCGAGC
GGCAAGCCGTTGCTGCATTTCCTCCATGGCAACGGCTTCTGCGGCCGCACCTACGAACCGATGCTGCGTCTG
TTGGCGGAGGATTTCGACCTCTGGCTGTGCGACATCCAGGGCCACGGCGAAAGCGACCATGGCGGCCGCTTC
CACGGCTGGAACCGCAACGCCGAGATGGCGGTGGAGGCCTTCGAGGCCGGGCGCGGTCCCTATGGCGATGTC
CAGCGACTGGCCTGCGGGCACAGCTTCGGCGGCGTCCTCAGCAGCCTCGTCCTGGCCCGCCATCCCACCCTG
TTCGCCCGCGCCGTGCTGCTCGACCCGGTACTGTTCACCCCGGCGATGATCGGCGTGATGGCACTTTCCGAG
ACCCTCGGCCTGCAATTGCGCGGCAGCCTGGCGAAGAAGGCGCGCCTGCGCCGCAGCCAGTGGCCCGATCGC
GCAGCCGCCTACGCCGGCTTGCGCGGCCGCGGTATCTTCAAGGGCTGGACCGACGAGGCGCTGTGGGCCTAC
GTGGAATATGCGCTGAAGGAGAGCGACGGCGGAGTCGAGCTGAAGTGCCGGCCAAGCCGCGAAGCGGAGATC
TTCAGCTCCTTCCCCAGGCGGCTGTGGCCGTCGCTGGGCAAGATCACCACGCCGACCCGCGTGCTCTACGGT
GACCGCACCTACCCTTTCGTCGCCAAGTCGGTGGCGCGCTGGTGCTCGCTCAACCCCCAGGTCAGCGCCCAC
GCGGTGGTCGGCGGCCACTGCTTCATGCAGGAAGACCCGGCCGCTGCCGCCGAACGCGTACGCGACTTTCTC
CTGCCCAATCCATGA
Translation:
MSLSPWSHSCSAGFTLRGWRSEPSGKPLLHFLHGNGFCGRTYEPMLRLLAEDFDLWLCDIQGHGESDHGGRF
HGWNRNAEMAVEAFEAGRGPYGDVQRLACGHSFGGVLSSLVLARHPTLFARAVLLDPVLFTPAMIGVMALSE
TLGLQLRGSLAKKARLRRSQWPDRAAAYAGLRGRGIFKGWTDEALWAYVEYALKESDGGVELKCRPSREAEI
FSSFPRRLWPSLGKITTPTRVLYGDRTYPFVAKSVARWCSLNPQVSAHAVVGGHCFMQEDPAAAAERVRDFL
LPNP*
AnnotationID:2446GeneID:2438
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:04
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA5513
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acetyltransferase
Functional Category Confidence Code:5
COGs:COG0596
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0596, MhpC, Predicted hydrolases or acyltransferases 
CD-Length = 282 residues,  94.3% aligned
Score = 82.8 bits (202), Expect = 5e-17
Identities = 60/275 (21%), Positives = 94/275 (34%), Gaps = 14/275 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4879




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33283




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2438_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2438
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4093
                           PA5513_tr
                           translation of PA5513
                           292
                           98.97
                           98.97
                           0
                           1561.0
     

     
     
122579
                           gb|AAG08898.1|AE004964_1
                           (AE004964) hypothetical protein PA5513 [Pseudomonas aeruginosa PAO1]
                           292
                           98.97
                           98.97
                           0
                           1561.0
     

     
     
122580
                           gb|AAN69007.1|AE016532_9
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           292
                           66.43
                           74.65
                           2
                           1032.0
     

     






      

          
GC ORFID: 45440How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5513Glimmer Score: 

          
Start: 5743219Stop: 5744097

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5513 translation of PA5513Homolog Bit Score 605.0

          
Other Homologs:  t_PA5513 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTATCCCCCTGGTCCCATTCCTGCTCCGCCGGTTTCACCCTGCGCGGCTGGCGCAGCGAACCGAGC 
GGCAAGCCGTTGCTGCATTTCCTCCATGGCAACGGCTTCTGCGGCCGCACCTACGAACCGATGCTGCGTCTG 
TTGGCGGAGGATTTCGACCTCTGGCTGTGCGACATCCAGGGCCACGGCGAAAGCGACCATGGCGGCCGCTTC 
CACGGCTGGAACCGCAACGCCGAGATGGCGGTGGAGGCCTTCGAGGCCGGGCGCGGTCCCTATGGCGATGTC 
CAGCGACTGGCCTGCGGGCACAGCTTCGGCGGCGTCCTCAGCAGCCTCGTCCTGGCCCGCCATCCCACCCTG 
TTCGCCCGCGCCGTGCTGCTCGACCCGGTACTGTTCACCCCGGCGATGATCGGCGTGATGGCACTTTCCGAG 
ACCCTCGGCCTGCAATTGCGCGGCAGCCTGGCGAAGAAGGCGCGCCTGCGCCGCAGCCAGTGGCCCGATCGC 
GCAGCCGCCTACGCCGGCTTGCGCGGCCGCGGTATCTTCAAGGGCTGGACCGACGAGGCGCTGTGGGCCTAC 
GTGGAATATGCGCTGAAGGAGAGCGACGGCGGAGTCGAGCTGAAGTGCCGGCCAAGCCGCGAAGCGGAGATC 
TTCAGCTCCTTCCCCAGGCGGCTGTGGCCGTCGCTGGGCAAGATCACCACGCCGACCCGCGTGCTCTACGGT 
GACCGCACCTACCCTTTCGTCGCCAAGTCGGTGGCGCGCTGGTGCTCGCTCAACCCCCAGGTCAGCGCCCAC 
GCGGTGGTCGGCGGCCACTGCTTCATGCAGGAAGACCCGGCCGCTGCCGCCGAACGCGTACGCGACTTTCTC 
CTGCCCAATCCATGA