ViewGene

Locus Name:
GeneID:
Location:

GeneID:2435
TrivialName: PA14_61770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61770
PAO1 Ortholog Locus:PA4670
Sequence Length:942
Protein Length:313
Start: 5510351
Stop: 5511292
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08057.1|AE004880_13 (AE004880) ribose-phosphate pyrophosphokinase [Pseudomonas aeruginosa PAO1]
Identities = 313/313 (100%), Positives = 313/313 (100%)
Sequence:
GTGTCCAAGATGATGGTCTTCACGGGGAACGCTAACCCCGATCTTGCACGACGCGTCGTGCGTCAGCTGCAC
ATTCCTCTTGGCGATGTTTCAGTTGGCAAATTCTCCGATGGCGAAATCAGCGTCGAAATCAACGAAAACGTC
CGCGGCAAGGACGTATTCCTGATTCAGCCGACCTGCGCGCCGACCAACGACAACCTGATGGAACTGGTGGTG
ATGGCCGATGCCTTCCGCCGCTCCTCGGCCACTCGTATCACCGCTGTCATCCCCTACTTCGGCTATGCCCGC
CAGGATCGCCGTCCGCGCTCCGCCCGCGTGGCCATCAGCGCCAAGGTAGTGGCCGACATGCTGACCGTCGTC
GGGGTCAACCGTGTCCTCACGGTCGACCTGCACGCGGATCAGATCCAGGGCTTCTTCGATATCCCGGTAGAC
AACATCTACGGTTCCCCCGTGCTGGTGGACGATATCGAAGACCAGCGCTTCGAGAACCTGATGATCGTCTCC
CCGGACATCGGCGGCGTGGTGCGCGCGCGCGCCGTGGCCAAGTCCCTGGGCGTGGACCTTGCGATCATCGAC
AAGCGTCGTCCCAAGGCCAACCAGTCCGAAGTGATGCACATCATCGGTGACGTCGAAGGCCGTACCTGCGTA
CTGGTAGACGACATGGTCGATACCGCCGGCACCCTCGGTCACGCCGCCAAGGCACTGAAAGAGCACGGCGCC
GCCAAGGTCATCGCCTACTGCACCCACCCGGTGCTGTCCGGCCGTGCCATCGAGAACATCGAGAAATCCGTA
CTGGACGAGCTGGTGGTGACCAACACCATCCCGCTGTCCGCCGCTGCCCAGGCCTGTGGCCGCATCCGCCAG
CTGGACATCGCTCCGGTCGTTGCGGAAGCCATGCGCCGGATCAGCAACGAAGAATCGATCAGCGCGATGTTC
CGCTGA
Translation:
MSKMMVFTGNANPDLARRVVRQLHIPLGDVSVGKFSDGEISVEINENVRGKDVFLIQPTCAPTNDNLMELVV
MADAFRRSSATRITAVIPYFGYARQDRRPRSARVAISAKVVADMLTVVGVNRVLTVDLHADQIQGFFDIPVD
NIYGSPVLVDDIEDQRFENLMIVSPDIGGVVRARAVAKSLGVDLAIIDKRRPKANQSEVMHIIGDVEGRTCV
LVDDMVDTAGTLGHAAKALKEHGAAKVIAYCTHPVLSGRAIENIEKSVLDELVVTNTIPLSAAAQACGRIRQ
LDIAPVVAEAMRRISNEESISAMFR*
AnnotationID:2443GeneID:2435
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 20:08:00
Gene Name:prs
Confidence Code:2
GeneProduct:ribose-phosphate pyrophosphokinase
Cell Localization:()
Synonyms:prsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:phosphoribosylpyrophosphate synthetase
Functional Category Confidence Code:5
COGs:COG0462
Secondary Functional Category(ies):carbon compound metabolism
EC Number:2.7.6.1
Status:ACTIVE
Pathway:
Homology:
gb|AAN66347.1|AE016263_4 (AE016776) ribose-phosphate pyrophosphokinase [Pseudomonas putida
           KT2440]
          Length = 313

 Score =  582 bits (1501), Expect = e-166
 Identities = 299/313 (95%), Positives = 306/313 (97%)

>gb|AAO54633.1| (AE016859) ribose-phosphate pyrophosphokinase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 313

 Score =  582 bits (1499), Expect = e-165
 Identities = 299/313 (95%), Positives = 305/313 (97%)

>gb|AAC74291.1| (AE000219) phosphoribosylpyrophosphate synthetase [Escherichia coli
           K12]
          Length = 315

 Score =  421 bits (1083), Expect = e-117
 Identities = 211/313 (67%), Positives = 258/313 (82%), Gaps = 1/313 (0%)

Structural Features:
COG0462, PrsA, Phosphoribosylpyrophosphate synthetase 
[Nucleotide transport and metabolism / Amino acid transport and metabolism]
CD-Length = 314 residues,  99.7% aligned
Score =  423 bits (1089), Expect = 1e-119
Identities = 178/315 (56%), Positives = 236/315 (74%), Gaps = 4/315 (1%)
Genomic Context:
Comment:
ReferenceID:14587
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22019
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37598
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2435_cdd.html
URL:
ReferenceID:37762
Author/Investigator(s): Hove-Jensen B.
Title: Cloning and characterization of the prs gene encoding phosphoribosylpyrophosphate synthetase of Escherichia coli.
PubMed: 3003529
MedLine:
Source:
Mol Gen Genet. 1985;201(2):269-76.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3003529
ReferenceID:37763
Author/Investigator(s): Krath BN, Hove-Jensen B.
Title: Bacillus caldolyticus prs gene encoding phosphoribosyl-diphosphate synthase.
PubMed: 8918235
MedLine:
Source:
Gene. 1996 Oct 17;176(1-2):73-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8918235
ReferenceID:37764
Author/Investigator(s): Bower SG, Hove-Jensen B, Switzer RL.
Title: Structure of the gene encoding phosphoribosylpyrophosphate synthetase (prsA) in Salmonella typhimurium.
PubMed: 2838463
MedLine:
Source:
J Bacteriol. 1988 Jul;170(7):3243-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2838463
Homologs By Global Alignment
Gene ID:2435

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4090 PA4670_tr translation of PA4670 313 99.99 99.99 0 1560.0
122352 gb|AAG08057.1|AE004880_13 (AE004880) ribose-phosphate pyrophosphokinase [Pseudomonas aeruginosa PAO1] 313 99.68 99.99 0 1557.0
122353 gb|AAN66347.1|AE016263_4 (AE016776) ribose-phosphate pyrophosphokinase [Pseudomonas putida KT2440] 313 95.20 97.76 0 1497.0
122354 gb|AAO54633.1| (AE016859) ribose-phosphate pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000] 313 95.20 97.44 0 1495.0
122356 emb|CAE31400.1| (BX640439) ribose-phosphate pyrophosphokinase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 314 71.01 82.80 5 1132.0
GC ORFID: 45437How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4670Glimmer Score:
Start: 4774031Stop: 4774972
Length: 942
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4670 translation of PA4670Homolog Bit Score 605.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5095 (ORF: BLASTX 578.0), t_PA4670 (ORF: GLIMMER)
GC ORF Sequence
GTGTCCAAGATGATGGTCTTCACGGGGAACGCTAACCCCGATCTTGCACGACGCGTCGTGCGTCAGCTGCAC
ATTCCTCTTGGCGATGTTTCAGTTGGCAAATTCTCCGATGGCGAAATCAGCGTCGAAATCAACGAAAACGTC
CGCGGCAAGGACGTATTCCTGATTCAGCCGACCTGCGCGCCGACCAACGACAACCTGATGGAACTGGTGGTG
ATGGCCGATGCCTTCCGCCGCTCCTCGGCCACTCGTATCACCGCTGTCATCCCCTACTTCGGCTATGCCCGC
CAGGATCGCCGTCCGCGCTCCGCCCGCGTGGCCATCAGCGCCAAGGTAGTGGCCGACATGCTGACCGTCGTC
GGGGTCAACCGTGTCCTCACGGTCGACCTGCACGCGGATCAGATCCAGGGCTTCTTCGATATCCCGGTAGAC
AACATCTACGGTTCCCCCGTGCTGGTGGACGATATCGAAGACCAGCGCTTCGAGAACCTGATGATCGTCTCC
CCGGACATCGGCGGCGTGGTGCGCGCGCGCGCCGTGGCCAAGTCCCTGGGCGTGGACCTTGCGATCATCGAC
AAGCGTCGTCCCAAGGCCAACCAGTCCGAAGTGATGCACATCATCGGTGACGTCGAAGGCCGTACCTGCGTA
CTGGTAGACGACATGGTCGATACCGCCGGCACCCTCGGTCACGCCGCCAAGGCACTGAAAGAGCACGGCGCC
GCCAAGGTCATCGCCTACTGCACCCACCCGGTGCTGTCCGGCCGTGCCATCGAGAACATCGAGAAATCCGTA
CTGGACGAGCTGGTGGTGACCAACACCATCCCGCTGTCCGCCGCTGCCCAGGCCTGTGGCCGCATCCGCCAG
CTGGACATCGCTCCGGTCGTTGCGGAAGCCATGCGCCGGATCAGCAACGAAGAATCGATCAGCGCGATGTTC
CGCTGA