ViewGene

Locus Name:
GeneID:
Location:

GeneID:2433
TrivialName: PA14_28340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28340
PAO1 Ortholog Locus:PA2765
Sequence Length:900
Protein Length:299
Start: 2448732
Stop: 2449631
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06153.1|AE004704_7 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/299 (100%), Positives = 299/299 (100%)
Sequence:
ATGATAGATGGAGGCAACATGAGCGCGGCTCAGCCAGGCATTCTCACCCCGATTCCGGTGGTGGGTCGCTAC
CTGTTTTTCAGCATTTCCCAACCCGAGCAGGTGGCCGCGACCTTGGCCAGCCTGGCCGCGGCCACCGATGGT
TACCAGCTGGTGGTGGGTATCGGCCATTCGCTGATGCTCAGCCTCGGCAAGACCGTCGAGGGCATGAAGGAC
TATCCGGTGCTCGCCGCGCCCGGCATCGACCTGCCGTCCACGCCCTCCGCGCTGTGGTGCTGGCTGCGCGGC
GAGGATCGCGGCGAGGTGACGCTGCGCTCGCACGCGCTGGAACGGTCGCTGGCGCCGGCCTTCCAGCGGACC
GGCGCGGTGGATGCGTTCCTCTACGGCGAGGACCGCGACCTGTCCGGCTACAAGGACGGCACCGAGAACCCC
AAGGGCGATGCGGCGCTCGAAGCCGCGCTGGTCTCCGGGCGCGGTGCGGGCCTGGATGGCGGCAGTTTCGTT
GCTGTCCAGCAGTGGCTGCATGACTTCGACCGGATGCAGGCGATCCCCGGCGAGGAGATGGACAACATCATC
GGCCGCCGCAAGTCCGACGATGAAGAACTGGAAGACGCGCCGGCCTACGCCCACGTCAAGCGCACCGAGCAG
GAAAGCTTCGAGCCCGCCGCGTTCCTCCTGCGGCGCGGCGCGCCCTGGTCCGACGAGCACCGCGCGGGGCTG
TTGTTCGCCGCCTTCGGCCGCTCGTTCGAGGCCTTCGAGGTCCAGTGGCTACGGATGATCGGCGTGGAAGAC
GGGGTGCTCGATGGCCTGTTCCGTTTCACCCGGCCGATCAGCGGCAGCTACTTCTGGTGTCCGCCCATGGCC
GACGGCCGCCTCGACCTGTCCGCCCTCGGCCTCTGA
Translation:
MIDGGNMSAAQPGILTPIPVVGRYLFFSISQPEQVAATLASLAAATDGYQLVVGIGHSLMLSLGKTVEGMKD
YPVLAAPGIDLPSTPSALWCWLRGEDRGEVTLRSHALERSLAPAFQRTGAVDAFLYGEDRDLSGYKDGTENP
KGDAALEAALVSGRGAGLDGGSFVAVQQWLHDFDRMQAIPGEEMDNIIGRRKSDDEELEDAPAYAHVKRTEQ
ESFEPAAFLLRRGAPWSDEHRAGLLFAAFGRSFEAFEVQWLRMIGVEDGVLDGLFRFTRPISGSYFWCPPMA
DGRLDLSALGL*
AnnotationID:2441GeneID:2433
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 20:08:33
Gene Name:
Confidence Code:3
GeneProduct:putative peroxidase
Cell Localization:()
Synonyms:PA2765
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04261,COG2837
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68855.1|AE016518_1 (AE016786) Dyp-type peroxidase family protein [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  307 bits (787), Expect = 4e-83
 Identities = 148/288 (51%), Positives = 205/288 (71%), Gaps = 8/288 (2%)
Structural Features:
pfam04261, Dyp_perox, Dyp-type peroxidase family.

COG2837, Predicted iron-dependent peroxidase 
[Inorganic ion transport and metabolism]
Genomic Context:
Comment:
ReferenceID:4869
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22015
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36275
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2433_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2433

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4088 PA2765_tr translation of PA2765 299 99.99 99.99 0 1560.0
122347 gb|AAG06153.1|AE004704_7 (AE004704) hypothetical protein PA2765 [Pseudomonas aeruginosa PAO1] 299 99.99 99.99 0 1560.0
122348 gb|AAN68855.1|AE016518_1 (AE016786) Dyp-type peroxidase family protein [Pseudomonas putida KT2440] 301 49.16 68.10 16 785.0
GC ORFID: 45435How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2765Glimmer Score:
Start: 2505194Stop: 2504295
Length: 900
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2765 translation of PA2765Homolog Bit Score 605.0
Other Homologs: t_PA2765 (ORF: GLIMMER)
GC ORF Sequence
ATGATAGATGGAGGCAACATGAGCGCGGCTCAGCCAGGCATTCTCACCCCGATTCCGGTGGTGGGTCGCTAC
CTGTTTTTCAGCATTTCCCAACCCGAGCAGGTGGCCGCGACCTTGGCCAGCCTGGCCGCGGCCACCGATGGT
TACCAGCTGGTGGTGGGTATCGGCCATTCGCTGATGCTCAGCCTCGGCAAGACCGTCGAGGGCATGAAGGAC
TATCCGGTGCTCGCCGCGCCCGGCATCGACCTGCCGTCCACGCCCTCCGCGCTGTGGTGCTGGCTGCGCGGC
GAGGATCGCGGCGAGGTGACGCTGCGCTCGCACGCGCTGGAACGGTCGCTGGCGCCGGCCTTCCAGCGGACC
GGCGCGGTGGATGCGTTCCTCTACGGCGAGGACCGCGACCTGTCCGGCTACAAGGACGGCACCGAGAACCCC
AAGGGCGATGCGGCGCTCGAAGCCGCGCTGGTCTCCGGGCGCGGTGCGGGCCTGGATGGCGGCAGTTTCGTT
GCTGTCCAGCAGTGGCTGCATGACTTCGACCGGATGCAGGCGATCCCCGGCGAGGAGATGGACAACATCATC
GGCCGCCGCAAGTCCGACGATGAAGAACTGGAAGACGCGCCGGCCTACGCCCACGTCAAGCGCACCGAGCAG
GAAAGCTTCGAGCCCGCCGCGTTCCTCCTGCGGCGCGGCGCGCCCTGGTCCGACGAGCACCGCGCGGGGCTG
TTGTTCGCCGCCTTCGGCCGCTCGTTCGAGGCCTTCGAGGTCCAGTGGCTACGGATGATCGGCGTGGAAGAC
GGGGTGCTCGATGGCCTGTTCCGTTTCACCCGGCCGATCAGCGGCAGCTACTTCTGGTGTCCGCCCATGGCC
GACGGCCGCCTCGACCTGTCCGCCCTCGGCCTCTGA