ViewGene
Locus Name:
GeneID:
Location:

GeneID:2432
TrivialName: PA14_29340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29340
PAO1 Ortholog Locus:PA2689
Sequence Length:915
Protein Length:304
Start: 2539410
Stop: 2538496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06077.1|AE004697_2 (AE004697) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%)
Sequence:
ATGAGAACTTCCCTGCTCGTCGCCGCCCTGGGCCTCGCCCTGGCGGCGGCCCTGCCCGGCGGCGCGCCTCTG
GCGCAACCGGACCCCGAGGCGACCATGGACCGCAGCCTGCTGCAACGCCAGGACCTGCCCTACCGCTTCAGC
GCCGTGGACCTGGACTCCGTCGATGGCCAGCGGCATTACCGGCTGTGGCTCGGCCGACCGCTGCAGGCACCG
CCCGCCGCCGGCTACCCGGTGGTCTGGATGCTCGACGGCAACGCCGCCGTCGGCGCCCTCGACGCGTCCACC
CTGAGACGCCTGGCCGACGGCGACGCACCGCTGCTGGTCGCCATCGGCTACCGCACGCCGCTGCGCATCGAC
CGCGCCGGGCGTACCTTCGACTACACCCCCGCGAGTCCCGGCCAGGCCGATCAGCGCGACCCGCTCAACGGC
CTGCCCAGCGGTGGCGCCGACGCCTTCCTCGACCTGCTGCGCGACGGCATGCGCCCGGCCGTGGCGGCGCAG
GCGCCCCTGGACACTGCGCGACAAACCCTCTGGGGACACTCCTACGGCGGCTTGCTGGTGCTCCACGCACTG
TTCACCCGTCCCGGCGAGTTCGCCCGCTACGCCGCGGCCAGCCCGTCGCTGTGGTGGCGCGACGGGGCGATC
CTCGGCGAGCGAGCGGGGCTCGAACAGCGCCTGCGCGGAAAGCGCGCGGAACTCCTGCTCTGGCGCGGCAGC
GCCGAACCGGCCAGCCCGCGCGGCTCGCTGAAAGCCGAGCCGGGCCAGGCGATGGCGCGGCTGGTAGATGAC
CTGCGCCGGGTTGCCGGGCTGACGCTGGACTTCCAGCCGCTCGACGGCCTGGGTCATGGCGAAACGCTGGGG
GCCTCGTTGCGCCTTCTGCTCGCCCGTCCGGCGGTGGAACGCCAGCGCTGA
Translation:
MRTSLLVAALGLALAAALPGGAPLAQPDPEATMDRSLLQRQDLPYRFSAVDLDSVDGQRHYRLWLGRPLQAP
PAAGYPVVWMLDGNAAVGALDASTLRRLADGDAPLLVAIGYRTPLRIDRAGRTFDYTPASPGQADQRDPLNG
LPSGGADAFLDLLRDGMRPAVAAQAPLDTARQTLWGHSYGGLLVLHALFTRPGEFARYAAASPSLWWRDGAI
LGERAGLEQRLRGKRAELLLWRGSAEPASPRGSLKAEPGQAMARLVDDLRRVAGLTLDFQPLDGLGHGETLG
ASLRLLLARPAVERQR*
AnnotationID:2440GeneID:2432
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2689
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2819
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2819, Predicted hydrolase of the alpha/beta superfamily
CD-Length = 264 residues, 100.0% aligned
Score =  154 bits (388), Expect = 2e-38
Identities = 104/268 (38%), Positives = 132/268 (49%), Gaps = 6/268 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36322




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2432_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2432
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4087
                           PA2689_tr
                           translation of PA2689
                           304
                           99.67
                           99.67
                           0
                           1561.0
     

     
     
122343
                           gb|AAG06077.1|AE004697_2
                           (AE004697) hypothetical protein PA2689 [Pseudomonas aeruginosa PAO1]
                           304
                           99.67
                           99.67
                           0
                           1561.0
     

     
     
122344
                           gb|AAN66159.1|AE016243_11
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           304
                           59.86
                           68.42
                           7
                           890.0
     

     
     
122345
                           gb|AAM38462.1|
                           (AE012012) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           329
                           41.94
                           54.40
                           34
                           565.0
     

     
     
122346
                           gb|AAM40861.1|
                           (AE012257) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           430
                           26.27
                           33.72
                           163
                           376.0
     

     






      

          
GC ORFID: 45434How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2689Glimmer Score: 

          
Start: 2414516Stop: 2415430

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2689 translation of PA2689Homolog Bit Score 605.0

          
Other Homologs:  t_PA2689 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAACTTCCCTGCTCGTCGCCGCCCTGGGCCTCGCCCTGGCGGCGGCCCTGCCCGGCGGCGCGCCTCTG 
GCGCAACCGGACCCCGAGGCGACCATGGACCGCAGCCTGCTGCAACGCCAGGACCTGCCCTACCGCTTCAGC 
GCCGTGGACCTGGACTCCGTCGATGGCCAGCGGCATTACCGGCTGTGGCTCGGCCGACCGCTGCAGGCACCG 
CCCGCCGCCGGCTACCCGGTGGTCTGGATGCTCGACGGCAACGCCGCCGTCGGCGCCCTCGACGCGTCCACC 
CTGAGACGCCTGGCCGACGGCGACGCACCGCTGCTGGTCGCCATCGGCTACCGCACGCCGCTGCGCATCGAC 
CGCGCCGGGCGTACCTTCGACTACACCCCCGCGAGTCCCGGCCAGGCCGATCAGCGCGACCCGCTCAACGGC 
CTGCCCAGCGGTGGCGCCGACGCCTTCCTCGACCTGCTGCGCGACGGCATGCGCCCGGCCGTGGCGGCGCAG 
GCGCCCCTGGACACTGCGCGACAAACCCTCTGGGGACACTCCTACGGCGGCTTGCTGGTGCTCCACGCACTG 
TTCACCCGTCCCGGCGAGTTCGCCCGCTACGCCGCGGCCAGCCCGTCGCTGTGGTGGCGCGACGGGGCGATC 
CTCGGCGAGCGAGCGGGGCTCGAACAGCGCCTGCGCGGAAAGCGCGCGGAACTCCTGCTCTGGCGCGGCAGC 
GCCGAACCGGCCAGCCCGCGCGGCTCGCTGAAAGCCGAGCCGGGCCAGGCGATGGCGCGGCTGGTAGATGAC 
CTGCGCCGGGTTGCCGGGCTGACGCTGGACTTCCAGCCGCTCGACGGCCTGGGTCATGGCGAAACGCTGGGG 
GCCTCGTTGCGCCTTCTGCTCGCCCGTCCGGCGGTGGAACGCCAGCGCTGA