ViewGene
Locus Name:
GeneID:
Location:

GeneID:2431
TrivialName: PA14_32700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32700
PAO1 Ortholog Locus:PA2469
Sequence Length:915
Protein Length:304
Start: 2839486
Stop: 2840400
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05857.1|AE004674_7 (AE004674) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGGACTGGACCCGCCGCCTGCGCCTGCAACACCTGCAACTGCTGGTCAGCCTGATGGAGACCGGCAACCTC
AGCGGCACCGCCCGGGCCGCACACACCACCCAACCGGGCCTGTCGAAGTGGCTCAAGGAACTGGAGGAGGAC
GTCGGCGCGCCGCTGTTCGAGCGCCACGCCCGTGGCCTGCGCCCGACGCCCTACGGCATGACTCTGTTCAAC
CACGCCCAGCGCGTGCTCACCGAGATGGAGCGGGCGCGGCAGAACCTCGAGGCGATGCGCAGCGGCAGCGGC
AGCCGGGTGCTCCTCGGCACGTCGCCGGCCTCCGCGCCGAGCCTGGTGCCGCGCGCATTGCGGGCGTTCCTC
GGACGCTACCCCGGGGCCCAGGTGGAACTGCTCGAAGGCACCATGAACGGCCTTCTCGAACGGCTGGAGAAA
CGCCAGCTCGATGTGGTGGTGGGGCGCCTGGACAACTATGCGCCGCGCGCCAGCCTGCGCTGCGAGGTGCTC
TACAGCGAGGCGATCGTGGTGATGGCGCGGCCCGGTCACCCCCTGGCCCAGGCCGCCGCGCTGGACTGGGAA
GACGTGCGGCGCTACGACTGGATCGTCTGGCCGCCCGGCTCGCCGATCCGCAGCAAGCTCGACATGGCCCTG
ACCCAGGGCGGCCGGCAGCCGCCGGCCTACCGCCTGGAGTCATCGTCGATGCTGGCCAACATCGAATTGTTG
CGTGGCAGCGACATGCTATCCATCGGCTCGGCGCGGGTGGTCGAGCACCTCGCCGGGCTCGGCCTGGTGGCC
AGGCTGGCGCTGGAGATTCCCGGCGAGGGCGCGGTGGGTATGTGCTGGCGCGACGAACCGCATCGCGACCGC
GCCAGCGAAGACCTGCTGGCCTGCCTGCGCGAAGGCGCGGCGGCCGAGTAG
Translation:
MDWTRRLRLQHLQLLVSLMETGNLSGTARAAHTTQPGLSKWLKELEEDVGAPLFERHARGLRPTPYGMTLFN
HAQRVLTEMERARQNLEAMRSGSGSRVLLGTSPASAPSLVPRALRAFLGRYPGAQVELLEGTMNGLLERLEK
RQLDVVVGRLDNYAPRASLRCEVLYSEAIVVMARPGHPLAQAAALDWEDVRRYDWIVWPPGSPIRSKLDMAL
TQGGRQPPAYRLESSSMLANIELLRGSDMLSIGSARVVEHLAGLGLVARLALEIPGEGAVGMCWRDEPHRDR
ASEDLLACLREGAAAE*
AnnotationID:2439GeneID:2431
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:26
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA2469
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22011




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2431
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4086
                           PA2469_tr
                           translation of PA2469
                           304
                           99.99
                           99.99
                           0
                           1560.0
     

     
     
122337
                           gb|AAG05857.1|AE004674_7
                           (AE004674) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           304
                           99.99
                           99.99
                           0
                           1560.0
     

     
     
122340
                           gb|AAL21084.1|
                           (AE008797) putative LysR family transcriptional regulator [Salmonella typhimurium LT2]
                           308
                           39.93
                           57.46
                           10
                           552.0
     

     
     
122341
                           gb|AAO68373.1|
                           (AE016836) putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           308
                           39.93
                           57.46
                           10
                           552.0
     

     
     
122342
                           emb|CAD02560.1|
                           (AL627273) putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi]
                           308
                           39.93
                           57.46
                           10
                           552.0
     

     






      

          
GC ORFID: 45433How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2469Glimmer Score: 

          
Start: 2114438Stop: 2113524

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2469 translation of PA2469Homolog Bit Score 605.0

          
Other Homologs:  t_PA2469 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTGGACCCGCCGCCTGCGCCTGCAACACCTGCAACTGCTGGTCAGCCTGATGGAGACCGGCAACCTC 
AGCGGCACCGCCCGGGCCGCACACACCACCCAACCGGGCCTGTCGAAGTGGCTCAAGGAACTGGAGGAGGAC 
GTCGGCGCGCCGCTGTTCGAGCGCCACGCCCGTGGCCTGCGCCCGACGCCCTACGGCATGACTCTGTTCAAC 
CACGCCCAGCGCGTGCTCACCGAGATGGAGCGGGCGCGGCAGAACCTCGAGGCGATGCGCAGCGGCAGCGGC 
AGCCGGGTGCTCCTCGGCACGTCGCCGGCCTCCGCGCCGAGCCTGGTGCCGCGCGCATTGCGGGCGTTCCTC 
GGACGCTACCCCGGGGCCCAGGTGGAACTGCTCGAAGGCACCATGAACGGCCTTCTCGAACGGCTGGAGAAA 
CGCCAGCTCGATGTGGTGGTGGGGCGCCTGGACAACTATGCGCCGCGCGCCAGCCTGCGCTGCGAGGTGCTC 
TACAGCGAGGCGATCGTGGTGATGGCGCGGCCCGGTCACCCCCTGGCCCAGGCCGCCGCGCTGGACTGGGAA 
GACGTGCGGCGCTACGACTGGATCGTCTGGCCGCCCGGCTCGCCGATCCGCAGCAAGCTCGACATGGCCCTG 
ACCCAGGGCGGCCGGCAGCCGCCGGCCTACCGCCTGGAGTCATCGTCGATGCTGGCCAACATCGAATTGTTG 
CGTGGCAGCGACATGCTATCCATCGGCTCGGCGCGGGTGGTCGAGCACCTCGCCGGGCTCGGCCTGGTGGCC 
AGGCTGGCGCTGGAGATTCCCGGCGAGGGCGCGGTGGGTATGTGCTGGCGCGACGAACCGCATCGCGACCGC 
GCCAGCGAAGACCTGCTGGCCTGCCTGCGCGAAGGCGCGGCGGCCGAGTAG