ViewGene
Locus Name:
GeneID:
Location:

GeneID:2430
TrivialName: PA14_33840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33840
PAO1 Ortholog Locus:PA2383
Sequence Length:921
Protein Length:306
Start: 3007822
Stop: 3008742
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05771.1|AE004664_8 (AE004664) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 305/306 (99%), Positives = 305/306 (99%)
Sequence:
ATGCTCAATCCCGACGATTTCCGTTTTCCTTCCATCGAAGCGTTGCAGGCGTTCGAAGCGGCTGCCCGGCTG
GGTACCTTCGAGCGCGCCGCCGAACTCCTGTCGATCACCGGCAGCGCCGCCAGCAAGCGGGTTTCCGGTCTC
GAGGGGATGCTCGGGGTGAGCCTGTTGCAGCGCGACGGCCGCTCGCTGGCGCTGACCTCCCACGGCCGCGAG
TACCTCGAACAGATCGCGCCGATCCTCGCCCAGCTCGCGGCGGTTCCGCTGCATCGTCGCCAGGTCCAGCGC
CAGCAGCGGCTGACCCTGCGCACGCCGCCGACCTTCGCCCGGCAGATCCTGATTCCGCGCCTGGCGTCCTTC
GCCGAGGCCTGTCCGGAAATCGAGCTGGAGATTCTCCTGTCGAGTCCTTCGGACGGCCAGGACCTGCCGCTG
GCCGATGTCGAGGTGCGCGGCGACAGCCATGGCGTGGCGGCCGGTGAGCGGCTGCTGGAGGAGCGCGTGCTA
CCGATGGCCGCGCCGGGGCTGCTGCTGGGCCTGCCGCGGCCCTGGACGCCAGCCATGCTCGCCGGCCTGCCG
TTGCTGCGCTCGCCGCTGGAGCCTTGGCAGCCGTGGTTCCGCGTGGCCGGGCTGGACTGGCCGGAGCCCTGC
GCCGGGCCGCGCCTGCTCGATTTGGGCATGACCCTGGAAGCCGCCGCCAACGGCCAGGGCGTGGCCCTCGCG
CGACCCTCGCTGGCGCGCGCCTGGCTTGCCGAGGGGCGGCTGGTGGTGCTGTTCCCGCTGCGTTCGGCGCCC
ACCCACCATTACCACCTGCGCAGCCACCAGGCCTCGCCGGCCAGCCAGCGTTTCGCCGCCTGGCTGGCGGCG
ATCTGCCGCGAGGCGGTGGCCCAGGGCAGGGAATTCCTTCCGGCGGCGGACGACTGA
Translation:
MLNPDDFRFPSIEALQAFEAAARLGTFERAAELLSITGSAASKRVSGLEGMLGVSLLQRDGRSLALTSHGRE
YLEQIAPILAQLAAVPLHRRQVQRQQRLTLRTPPTFARQILIPRLASFAEACPEIELEILLSSPSDGQDLPL
ADVEVRGDSHGVAAGERLLEERVLPMAAPGLLLGLPRPWTPAMLAGLPLLRSPLEPWQPWFRVAGLDWPEPC
AGPRLLDLGMTLEAAANGQGVALARPSLARAWLAEGRLVVLFPLRSAPTHHYHLRSHQASPASQRFAAWLAA
ICREAVAQGREFLPAADD*
AnnotationID:2438GeneID:2430
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2383
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score = 95.8 bits (237), Expect = 5e-21
Identities = 83/297 (27%), Positives = 115/297 (38%), Gaps = 10/297 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4863




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22009




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32924




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2430_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2430
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4085
                           PA2383_tr
                           translation of PA2383
                           306
                           99.67
                           99.67
                           0
                           1560.0
     

     
     
122333
                           gb|AAG05771.1|AE004664_8
                           (AE004664) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           99.67
                           99.67
                           0
                           1560.0
     

     
     
122334
                           emb|CAD16372.1|
                           (AL646071) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           317
                           38.48
                           49.52
                           32
                           472.0
     

     
     
122335
                           emb|CAD13853.1|
                           (AL646058) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           336
                           37.20
                           51.19
                           46
                           445.0
     

     
     
122336
                           emb|CAD18063.1|
                           (AL646081) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           335
                           36.71
                           48.05
                           51
                           420.0
     

     






      

          
GC ORFID: 45432How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2383Glimmer Score: 

          
Start: 1946094Stop: 1945174

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2383 translation of PA2383Homolog Bit Score 605.0

          
Other Homologs:  t_PA2383 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAATCCCGACGATTTCCGTTTTCCTTCCATCGAAGCGTTGCAGGCGTTCGAAGCGGCTGCCCGGCTG 
GGTACCTTCGAGCGCGCCGCCGAACTCCTGTCGATCACCGGCAGCGCCGCCAGCAAGCGGGTTTCCGGTCTC 
GAGGGGATGCTCGGGGTGAGCCTGTTGCAGCGCGACGGCCGCTCGCTGGCGCTGACCTCCCACGGCCGCGAG 
TACCTCGAACAGATCGCGCCGATCCTCGCCCAGCTCGCGGCGGTTCCGCTGCATCGTCGCCAGGTCCAGCGC 
CAGCAGCGGCTGACCCTGCGCACGCCGCCGACCTTCGCCCGGCAGATCCTGATTCCGCGCCTGGCGTCCTTC 
GCCGAGGCCTGTCCGGAAATCGAGCTGGAGATTCTCCTGTCGAGTCCTTCGGACGGCCAGGACCTGCCGCTG 
GCCGATGTCGAGGTGCGCGGCGACAGCCATGGCGTGGCGGCCGGTGAGCGGCTGCTGGAGGAGCGCGTGCTA 
CCGATGGCCGCGCCGGGGCTGCTGCTGGGCCTGCCGCGGCCCTGGACGCCAGCCATGCTCGCCGGCCTGCCG 
TTGCTGCGCTCGCCGCTGGAGCCTTGGCAGCCGTGGTTCCGCGTGGCCGGGCTGGACTGGCCGGAGCCCTGC 
GCCGGGCCGCGCCTGCTCGATTTGGGCATGACCCTGGAAGCCGCCGCCAACGGCCAGGGCGTGGCCCTCGCG 
CGACCCTCGCTGGCGCGCGCCTGGCTTGCCGAGGGGCGGCTGGTGGTGCTGTTCCCGCTGCGTTCGGCGCCC 
ACCCACCATTACCACCTGCGCAGCCACCAGGCCTCGCCGGCCAGCCAGCGTTTCGCCGCCTGGCTGGCGGCG 
ATCTGCCGCGAGGCGGTGGCCCAGGGCAGGGAATTCCTTCCGGCGGCGGACGACTGA