ViewGene

Locus Name:
GeneID:
Location:

GeneID: 243

TrivialName: PA14_09340

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09340

PAO1 Ortholog Locus: PA4221

Sequence Length: 2163

Protein Length: 720

Start: 800018

Stop: 802180

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07609.1|AE004839_2 (AE004839) Fe(III)-pyochelin outer membrane receptor precursor [Pseudomonas aeruginosa PAO1] Identities = 720/720 (100%), Positives = 720/720 (100%)

Sequence:

ATGAAAACGGAGACGAAGGTGATCAAGGGACGCCAGGGCATCGCCCGCAATCGGCACACCCCGTTGTGCCTG
GGGCTGCTGCTGGCGCTGAGTCCGCTGGCGGCGGCCGTGGCCGACGCGCGCAAGGACGGCGAGACGGAACTG
CCGGACATGGTGATCAGCGGAGAAAGCACGTCTGCCACCCAGCCGCCGGGGGTGACTACCCTGGGCAAGGTG
CCGCTCAAGCCGCGCGAGCTGCCGCAGTCCGCCAGCGTCATCGACCATGAGCGCCTCGAACAGCAGAATCTG
TTCAGCCTCGACGAAGCCATGCAGCAGGCCACCGGGGTCACCGTGCAGCCGTTCCAGCTGCTGACCACCGCC
TACTACGTGCGCGGCTTCAAGGTCGACTCCTTCGAGCTGGACGGGGTGCCGGCGCTGCTTGGCAATACTGCC
AGTTCGCCGCAGGACATGGCGATCTACGAGCGGGTCGAGATCCTTCGCGGCTCCAACGGACTGCTGCATGGC
ACCGGCAACCCGGCGGCCACCGTCAACCTGGTGCGCAAGCGGCCGCAGCGCGAATTCGCCGCCAGCACCACC
CTCAGCGCCGGGCGCTGGGACCGCTACCGCGCCGAGGTCGACGTCGGCGGCCCGCTGAGCGCCAGCGGCAAC
GTGCGCGGCCGAGCGGTGGCCGCCTACGAGGACCGCGACTACTTCTACGACGTGGCCGACCAGGGCACCCGC
CTGCTCTACGGGGTGACCGAGTTCGACCTGAGCCCCGATACCCTGCTCACCGTCGGCGCGCAATACCAGCAC
ATCGACTCGATCACCAACATGGCCGGGGTGCCGATGGCCAAGGATGGGTCCAATCTCGGGCTGTCCCGCGAC
ACCTACCTCGATGTCGACTGGGACCGCTTCAAGTGGGACACCTACCGCGCCTTCGGCTCCCTCGAACAGCAA
CTGGGCGGCGGCTGGAAAGGCAAGGTCAGCGCCGAATACCAGGAAGCCGATTCGCGCCTGCGTTACGCCGGC
TCCTTCGGCGCCATCGACCCGCAGACCGGCGACGGTGGCCAGCTGATGGGCGCCGCCTACAAGTTCAAGAGC
ATCCAGCGCAGCCTCGACGCCAACCTCAATGGGCCGGTGCGACTGTTCGGCCTGACCCACGAACTGCTCGGT
GGGGTCACCTACGCCCAGGGCGAGACCCGCCAGGACACCGCACGCTTCCTCAACCTGCCGAACACCCCGGTC
AATGTCTACCGCTGGGACCCGCACGGCGTGCCGCGCCCGCAGATCGGCCAGTACACTTCGCCGGGCACCACC
ACCACCACCCAGAAAGGCCTCTATGCCCTGGGTCGGATCAAGCTCGCCGAGCCGCTGACCCTGGTGGTCGGC
GGCCGCGAAAGCTGGTGGGACCAGGACACCCCGGCCACTCGCTTCAAGCCCGGTCGCCAGTTCACGCCCTAC
GGCGGGCTGATCTGGGACTTCGCCAGGGACTGGTCGTGGTATGTCAGCTACGCCGAGGTCTACCAGCCGCAG
GCGGATCGCCAGACCTGGAACAGCGAGCCGTTGAGCCCGGTGGAAGGCAAGACCTACGAAACCGGGATCAAG
GGCGAACTGGCCGACGGCCGCCTGAACCTGTCGCTGGCGGCGTTCCGCATCGACCTGGAGAACAATCCGCAG
GAAGACCCGGACCATCCGGGGCCGCCCAACAATCCGTTCTACATCAGCGGCGGCAAGGTGCGCAGCCAGGGC
TTCGAGCTGGAAGGCACAGGCTACCTGACGCCCTACTGGAGTCTCTCGGCCGGCTACACCTACACCAGCACC
GAGTACCTCAAGGACAGCCAGAACGACTCGGGGACGCGCTACTCCACCTTCACCCCGAGGCACCTGCTGCGC
CTGTGGAGCAACTACGATCTGCCCTGGCAGGATCGGCGCTGGAGCGTCGGCGGCGGACTCCAGGCGCAGAGC
GACTACAGCGTCGACTACCGTGGCGTGAGCATGCGCCAGGGCGGCTACGCACTGGTCAACATGCGCCTGGGC
TACAAGATCGACGAGCACTGGACGGCGGCGGTCAACGTCAACAACCTGTTCGACCGGACCTACTACCAGAGC
CTGTCCAACCCCAACTGGAACAACCGCTACGGCGAACCGCGCAGCTTCAACGTCAGCCTGCGGGGCGCGTTC
TGA

Translation:

MKTETKVIKGRQGIARNRHTPLCLGLLLALSPLAAAVADARKDGETELPDMVISGESTSATQPPGVTTLGKV
PLKPRELPQSASVIDHERLEQQNLFSLDEAMQQATGVTVQPFQLLTTAYYVRGFKVDSFELDGVPALLGNTA
SSPQDMAIYERVEILRGSNGLLHGTGNPAATVNLVRKRPQREFAASTTLSAGRWDRYRAEVDVGGPLSASGN
VRGRAVAAYEDRDYFYDVADQGTRLLYGVTEFDLSPDTLLTVGAQYQHIDSITNMAGVPMAKDGSNLGLSRD
TYLDVDWDRFKWDTYRAFGSLEQQLGGGWKGKVSAEYQEADSRLRYAGSFGAIDPQTGDGGQLMGAAYKFKS
IQRSLDANLNGPVRLFGLTHELLGGVTYAQGETRQDTARFLNLPNTPVNVYRWDPHGVPRPQIGQYTSPGTT
TTTQKGLYALGRIKLAEPLTLVVGGRESWWDQDTPATRFKPGRQFTPYGGLIWDFARDWSWYVSYAEVYQPQ
ADRQTWNSEPLSPVEGKTYETGIKGELADGRLNLSLAAFRIDLENNPQEDPDHPGPPNNPFYISGGKVRSQG
FELEGTGYLTPYWSLSAGYTYTSTEYLKDSQNDSGTRYSTFTPRHLLRLWSNYDLPWQDRRWSVGGGLQAQS
DYSVDYRGVSMRQGGYALVNMRLGYKIDEHWTAAVNVNNLFDRTYYQSLSNPNWNNRYGEPRSFNVSLRGAF
*

AnnotationID:253 GeneID:243

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 06:06:36

Gene Name: fptA

Confidence Code: 1

GeneProduct: Fe(III)-pyochelin outer membrane receptor precursor

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4773,cd01347,pfam00593

Secondary Functional Category(ies): membrane protein

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN69798.1|AE016617_1 (AE016789) outer membrane ferripyoverdine receptor [Pseudomonas
           putida KT2440]
          Length = 812

 Score =  434 bits (1115), Expect = e-120
 Identities = 241/684 (35%), Positives = 381/684 (55%), Gaps = 26/684 (3%)

>gb|AAO55668.1| (AE016863) TonB-dependent siderophore receptor, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 825

 Score =  409 bits (1052), Expect = e-113
 Identities = 248/682 (36%), Positives = 375/682 (54%), Gaps = 24/682 (3%)

Structural Features:

COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
[Inorganic ion transport and metabolism]
CD-Length = 719 residues, 100.0% aligned
Score =  821 bits (2122), Expect = 0.0
Identities = 322/731 (44%), Positives = 430/731 (58%), Gaps = 24/731 (3%)

cd01347, ligand_gated_channel
CD-Length = 672 residues, 100.0% aligned
Score =  353 bits (907), Expect = 4e-98

pfam00593, TonB_dep_Rec, TonB dependent receptor
CD-Length = 712 residues, 100.0% aligned
Score =  277 bits (710), Expect = 2e-75
Identities = 184/719 (25%), Positives = 264/719 (36%), Gaps = 82/719 (11%)

Genomic Context:

Comment:

ReferenceID:489

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17631

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36924

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 243_cdd.html

URL:

ReferenceID:37009

Author/Investigator(s): Ankenbauer RG, Quan HN.

Title: FptA, the Fe(III)-pyochelin receptor of Pseudomonas aeruginosa: a phenolate siderophore receptor homologous to hydroxamate siderophore receptors.

PubMed: 8288523

MedLine:

Source:

J Bacteriol. 1994 Jan;176(2):307-19.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8288523`

Homologs By Global Alignment

Gene ID:243

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

413 PA4221_tr translation of PA4221 720 99.99 99.99 0 3833.0

22972 gb|AAG07609.1|AE004839_2 (AE004839) Fe(III)-pyochelin outer membrane receptor precursor [Pseudomonas aeruginosa PAO1] 720 99.99 99.99 0 3833.0

22973 gb|AAC43213.1| (U03161) Fe(III)-pyochelin receptor [Pseudomonas aeruginosa] 720 99.99 99.99 0 3833.0

GC ORFID: `43245`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4221`	Glimmer Score:
Start: `4153919`	Stop: `4151757`
Length: `2163`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4221 translation of PA4221`	Homolog Bit Score `1481.0`
Other Homologs: `t_PA4221 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAAACGGAGACGAAGGTGATCAAGGGACGCCAGGGCATCGCCCGCAATCGGCACACCCCGTTGTGCCTG GGGCTGCTGCTGGCGCTGAGTCCGCTGGCGGCGGCCGTGGCCGACGCGCGCAAGGACGGCGAGACGGAACTG CCGGACATGGTGATCAGCGGAGAAAGCACGTCTGCCACCCAGCCGCCGGGGGTGACTACCCTGGGCAAGGTG CCGCTCAAGCCGCGCGAGCTGCCGCAGTCCGCCAGCGTCATCGACCATGAGCGCCTCGAACAGCAGAATCTG TTCAGCCTCGACGAAGCCATGCAGCAGGCCACCGGGGTCACCGTGCAGCCGTTCCAGCTGCTGACCACCGCC TACTACGTGCGCGGCTTCAAGGTCGACTCCTTCGAGCTGGACGGGGTGCCGGCGCTGCTTGGCAATACTGCC AGTTCGCCGCAGGACATGGCGATCTACGAGCGGGTCGAGATCCTTCGCGGCTCCAACGGACTGCTGCATGGC ACCGGCAACCCGGCGGCCACCGTCAACCTGGTGCGCAAGCGGCCGCAGCGCGAATTCGCCGCCAGCACCACC CTCAGCGCCGGGCGCTGGGACCGCTACCGCGCCGAGGTCGACGTCGGCGGCCCGCTGAGCGCCAGCGGCAAC GTGCGCGGCCGAGCGGTGGCCGCCTACGAGGACCGCGACTACTTCTACGACGTGGCCGACCAGGGCACCCGC CTGCTCTACGGGGTGACCGAGTTCGACCTGAGCCCCGATACCCTGCTCACCGTCGGCGCGCAATACCAGCAC ATCGACTCGATCACCAACATGGCCGGGGTGCCGATGGCCAAGGATGGGTCCAATCTCGGGCTGTCCCGCGAC ACCTACCTCGATGTCGACTGGGACCGCTTCAAGTGGGACACCTACCGCGCCTTCGGCTCCCTCGAACAGCAA CTGGGCGGCGGCTGGAAAGGCAAGGTCAGCGCCGAATACCAGGAAGCCGATTCGCGCCTGCGTTACGCCGGC TCCTTCGGCGCCATCGACCCGCAGACCGGCGACGGTGGCCAGCTGATGGGCGCCGCCTACAAGTTCAAGAGC ATCCAGCGCAGCCTCGACGCCAACCTCAATGGGCCGGTGCGACTGTTCGGCCTGACCCACGAACTGCTCGGT GGGGTCACCTACGCCCAGGGCGAGACCCGCCAGGACACCGCACGCTTCCTCAACCTGCCGAACACCCCGGTC AATGTCTACCGCTGGGACCCGCACGGCGTGCCGCGCCCGCAGATCGGCCAGTACACTTCGCCGGGCACCACC ACCACCACCCAGAAAGGCCTCTATGCCCTGGGTCGGATCAAGCTCGCCGAGCCGCTGACCCTGGTGGTCGGC GGCCGCGAAAGCTGGTGGGACCAGGACACCCCGGCCACTCGCTTCAAGCCCGGTCGCCAGTTCACGCCCTAC GGCGGGCTGATCTGGGACTTCGCCAGGGACTGGTCGTGGTATGTCAGCTACGCCGAGGTCTACCAGCCGCAG GCGGATCGCCAGACCTGGAACAGCGAGCCGTTGAGCCCGGTGGAAGGCAAGACCTACGAAACCGGGATCAAG GGCGAACTGGCCGACGGCCGCCTGAACCTGTCGCTGGCGGCGTTCCGCATCGACCTGGAGAACAATCCGCAG GAAGACCCGGACCATCCGGGGCCGCCCAACAATCCGTTCTACATCAGCGGCGGCAAGGTGCGCAGCCAGGGC TTCGAGCTGGAAGGCACAGGCTACCTGACGCCCTACTGGAGTCTCTCGGCCGGCTACACCTACACCAGCACC GAGTACCTCAAGGACAGCCAGAACGACTCGGGGACGCGCTACTCCACCTTCACCCCGAGGCACCTGCTGCGC CTGTGGAGCAACTACGATCTGCCCTGGCAGGATCGGCGCTGGAGCGTCGGCGGCGGACTCCAGGCGCAGAGC GACTACAGCGTCGACTACCGTGGCGTGAGCATGCGCCAGGGCGGCTACGCACTGGTCAACATGCGCCTGGGC TACAAGATCGACGAGCACTGGACGGCGGCGGTCAACGTCAACAACCTGTTCGACCGGACCTACTACCAGAGC CTGTCCAACCCCAACTGGAACAACCGCTACGGCGAACCGCGCAGCTTCAACGTCAGCCTGCGGGGCGCGTTC TGA