ViewGene

Locus Name:
GeneID:
Location:

GeneID:2428
TrivialName: PA14_38420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38420
PAO1 Ortholog Locus:PA2017
Sequence Length:930
Protein Length:309
Start: 3427200
Stop: 3426271
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05405.1|AE004628_3 (AE004628) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 309/309 (100%), Positives = 309/309 (100%)
Sequence:
ATGAGTCGGCTGATGACCTACAGGACGCTGCTGGCTTGCCTGCTCGCCGCGTTGCTTGCGCTGCTGGTGGCG
GGTCAGCAGCAGCGCGCGTTCGAGCGCATCTGGTTCAAGCTGGAGCAGCGCTACGGCGGCGATGTTGCGCGC
GAGAACGCCCTGCGCCTGGCCGACTATCGGGTCGATATCGAAGCCCGCGTGCTGGGCGCGGAGTCCAACGTC
TCGGCGCTGTCCTTCGACCCCAGCCGGCGCAGCCTGGTCAGCGTGACCAACCAGGACCCGCATTTCCTCGAG
CTGTCGCTGGACGGCGAATTGCTGCGACGCATCCCCCTGCGCGGTTTCCAGGATCCGGAGGCTATCGAGTAC
ATCCGGCCCGGCGTCTACGTGGTCGCCGAGGAGCGTCGCCAACGCCTGGTGGAGATCCATGTCGACgccgaC
ACCCGGGTGATCGACATCGACGATCCGCGCAACGCCCGGAAGTtcTCCCtggGCAGTGCAAACAAACGCAAC
AAGGGCTTCGAGGGGTTGGCCTACGACCCGCTGCGCGAGCGCCTGTTCGTGGCCCGGGAAAAGGCGCCGGTG
GGCATCATCGAGGTAAACGGCTTCTTCAACGACCGCGGCGAGGCGCTCGACCTGAGCGTCGGCGGCGACCCG
CAGCGCGATCGCGGGTTGTTCCTCACCGATCTGTCGAGCCTCTACTACGACAAGGCCAGCGATCACCTGCTG
GTGCTTTCCGACGAGTCGCGGGTGGTCATCGAACTGGATCGCGCCGGGGATCCGCTCGGTAGCCTGACCCTG
CGTGGCGGCAACCATGGCCTGACGGACGACGTGCCGCAGGCCGAAGGGTTGGCGATGGACGACCGGGGCAGC
CTGTACGTGGTCAGCGAGCCGAACCTGTTCTACCGCTTCAGCCGAGCGCTGCCGGCGGCCGACTAG
Translation:
MSRLMTYRTLLACLLAALLALLVAGQQQRAFERIWFKLEQRYGGDVARENALRLADYRVDIEARVLGAESNV
SALSFDPSRRSLVSVTNQDPHFLELSLDGELLRRIPLRGFQDPEAIEYIRPGVYVVAEERRQRLVEIHVDAD
TRVIDIDDPRNARKFSLGSANKRNKGFEGLAYDPLRERLFVAREKAPVGIIEVNGFFNDRGEALDLSVGGDP
QRDRGLFLTDLSSLYYDKASDHLLVLSDESRVVIELDRAGDPLGSLTLRGGNHGLTDDVPQAEGLAMDDRGS
LYVVSEPNLFYRFSRALPAAD*
AnnotationID:2436GeneID:2428
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 19:07:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2017
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4859
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22005
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32678
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2428_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2428

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4082 PA2017_tr translation of PA2017 309 99.99 99.99 0 1561.0
122316 gb|AAG05405.1|AE004628_3 (AE004628) hypothetical protein PA2017 [Pseudomonas aeruginosa PAO1] 309 99.99 99.99 0 1561.0
4083 PA0327_tr translation of PA0327 324 51.54 66.97 18 772.0
122317 gb|AAG03716.1|AE004470_10 (AE004470) hypothetical protein PA0327 [Pseudomonas aeruginosa PAO1] 324 51.54 66.97 18 772.0
122318 gb|AAN70716.1|AE016715_5 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 311 48.23 65.59 13 680.0
GC ORFID: 45430How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2017Glimmer Score:
Start: 1526711Stop: 1527640
Length: 930
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2017 translation of PA2017Homolog Bit Score 605.0
Other Homologs: t_PA0327 (ORF: BLASTX 299.0), psyr_15may02_Scaffold6_revised_gene6527 (ORF: BLASTX 265.0), t_PA2017 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCGGCTGATGACCTACAGGACGCTGCTGGCTTGCCTGCTCGCCGCGTTGCTTGCGCTGCTGGTGGCG
GGTCAGCAGCAGCGCGCGTTCGAGCGCATCTGGTTCAAGCTGGAGCAGCGCTACGGCGGCGATGTTGCGCGC
GAGAACGCCCTGCGCCTGGCCGACTATCGGGTCGATATCGAAGCCCGCGTGCTGGGCGCGGAGTCCAACGTC
TCGGCGCTGTCCTTCGACCCCAGCCGGCGCAGCCTGGTCAGCGTGACCAACCAGGACCCGCATTTCCTCGAG
CTGTCGCTGGACGGCGAATTGCTGCGACGCATCCCCCTGCGCGGTTTCCAGGATCCGGAGGCTATCGAGTAC
ATCCGGCCCGGCGTCTACGTGGTCGCCGAGGAGCGTCGCCAACGCCTGGTGGAGATCCATGTCGACgccgaC
ACCCGGGTGATCGACATCGACGATCCGCGCAACGCCCGGAAGTtcTCCCtggGCAGTGCAAACAAACGCAAC
AAGGGCTTCGAGGGGTTGGCCTACGACCCGCTGCGCGAGCGCCTGTTCGTGGCCCGGGAAAAGGCGCCGGTG
GGCATCATCGAGGTAAACGGCTTCTTCAACGACCGCGGCGAGGCGCTCGACCTGAGCGTCGGCGGCGACCCG
CAGCGCGATCGCGGGTTGTTCCTCACCGATCTGTCGAGCCTCTACTACGACAAGGCCAGCGATCACCTGCTG
GTGCTTTCCGACGAGTCGCGGGTGGTCATCGAACTGGATCGCGCCGGGGATCCGCTCGGTAGCCTGACCCTG
CGTGGCGGCAACCATGGCCTGACGGACGACGTGCCGCAGGCCGAAGGGTTGGCGATGGACGACCGGGGCAGC
CTGTACGTGGTCAGCGAGCCGAACCTGTTCTACCGCTTCAGCCGAGCGCTGCCGGCGGCCGACTAG