ViewGene

Locus Name:
GeneID:
Location:

GeneID:2427
TrivialName: PA14_42060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42060
PAO1 Ortholog Locus:PA1738
Sequence Length:915
Protein Length:304
Start: 3751162
Stop: 3752076
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05127.1|AE004600_3 (AE004600) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 302/304 (99%), Positives = 304/304 (100%)
Sequence:
ATGAAAAAGCCCGATCTCGCCGGTCTCGCCGCCTTCGTCGCCATCGCTCGCGAACGCAGTTTCCGCCGCGCC
GCCGCCACCCTCGGCGTAACCCCGCCGACGCTCAGCCACACCCTGCGCGAACTGGAAACCCAGCTCGGCATC
CGCCTGCTCAACCGCACCACTCGCAACGTCTCGCCGACCGAGGCCGGCGAGCACCTGCTGGCACACCTGGAC
CCGGCGTTCGAAGACATCGCCGCCGCGCTGGACAGCCTTAACCGCTTTCGCGAAACGCCTCACGGCCTGGTA
CGAATCAACGCACCGCGAAACGCCATCGGTCTCGTCCTCGCGCCACGTTTCGGCGAACTGGCCCGCGACTAT
CCCGGCATCACCCTGGAAGTGGTGGCGGACGAGGGTTTCGCCAATATCGTCGAAGCCGGTTTCGACGCCGGC
ATCCGCCTCGGCGAAGACCTCCAGCACGGCATGCGCGCCGTGCGGGTCGGCCCGGACCTGCGCTTGGCCATC
GTCGCGACCCCGGCTTACTTCCGACGGCAAGGCAGGCCGGGTAGCCCGGAGGAATTGCTCGGCCACCGTTGC
ATCGGCTGGCGCAAGGTGTCTTCCGGAGAGCTGTACAAATGGCAATTCAGCAAGGGCACGAAAGCGCTTTCG
GTGGCCGTGAGCGGACCGCTGGTCCTCGACGACCCGCGCCTGATGCTACAGGCGGCGCTGGCCGATGTCGGG
ATTGCCTTCGCCATCGAGGAGGAAGTCGCCGAGCACCTCGCCGCCGGCCGCCTGGAACGGGTCCTGGCGGAT
TGGTGCGCCCCCTTTCCCGGTTTCCATCTCTATTATCCAAACCGCCGCAACCACCCGGCGGCGTTGAGCGCC
GTGATCGACCTGCTGCGCTACCCCGGCGAGGAACACCCAGGTCCCGCGTAG
Translation:
MKKPDLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAGEHLLAHLD
PAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGITLEVVADEGFANIVEAGFDAG
IRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSPEELLGHRCIGWRKVSSGELYKWQFSKGTKALS
VAVSGPLVLDDPRLMLQAALADVGIAFAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSA
VIDLLRYPGEEHPGPA*
AnnotationID:2435GeneID:2427
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1738
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC49864.1| (AP005951) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 297

 Score =  286 bits (731), Expect = 1e-76
 Identities = 143/295 (48%), Positives = 194/295 (65%)

>emb|CAC41727.1| (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 296

 Score =  281 bits (719), Expect = 3e-75
 Identities = 145/297 (48%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

>dbj|BAB51567.1| (AP003005) transcriptional regulator (LysR family) [Mesorhizobium
           loti]
          Length = 296

 Score =  278 bits (711), Expect = 3e-74
 Identities = 141/297 (47%), Positives = 189/297 (63%), Gaps = 1/297 (0%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  134 bits (338), Expect = 1e-32
Identities = 90/295 (30%), Positives = 121/295 (41%), Gaps = 11/295 (3%)
Genomic Context:
Comment:
ReferenceID:4857
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22003
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37126
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2427_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2427

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4078 PA1738_tr translation of PA1738 304 99.34 99.99 0 1560.0
122261 gb|AAG05127.1|AE004600_3 (AE004600) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 304 99.34 99.99 0 1560.0
122264 emb|CAC41727.1| (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti] 304 47.69 63.48 8 721.0
122263 dbj|BAC50813.1| (AP005955) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] 304 47.69 63.81 7 723.0
122268 gb|AAK86077.1| (AE007965) AGR_C_448p [Agrobacterium tumefaciens str. C58 (Cereon)] 304 47.03 60.19 8 690.0
GC ORFID: 45429How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1738Glimmer Score:
Start: 1202747Stop: 1201833
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1738 translation of PA1738Homolog Bit Score 605.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6026 (ORF: BLASTX 270.0), t_PA2220 (ORF: BLASTX 259.0), t_PA1128 (ORF: BLASTX 221.0), psyr_15may02_Scaffold11_revised_gene1868 (ORF: BLASTX 215.0), t_PA1328 (ORF: BLASTX 204.0), t_PA1738 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAAGCCCGATCTCGCCGGTCTCGCCGCCTTCGTCGCCATCGCTCGCGAACGCAGTTTCCGCCGCGCC
GCCGCCACCCTCGGCGTAACCCCGCCGACGCTCAGCCACACCCTGCGCGAACTGGAAACCCAGCTCGGCATC
CGCCTGCTCAACCGCACCACTCGCAACGTCTCGCCGACCGAGGCCGGCGAGCACCTGCTGGCACACCTGGAC
CCGGCGTTCGAAGACATCGCCGCCGCGCTGGACAGCCTTAACCGCTTTCGCGAAACGCCTCACGGCCTGGTA
CGAATCAACGCACCGCGAAACGCCATCGGTCTCGTCCTCGCGCCACGTTTCGGCGAACTGGCCCGCGACTAT
CCCGGCATCACCCTGGAAGTGGTGGCGGACGAGGGTTTCGCCAATATCGTCGAAGCCGGTTTCGACGCCGGC
ATCCGCCTCGGCGAAGACCTCCAGCACGGCATGCGCGCCGTGCGGGTCGGCCCGGACCTGCGCTTGGCCATC
GTCGCGACCCCGGCTTACTTCCGACGGCAAGGCAGGCCGGGTAGCCCGGAGGAATTGCTCGGCCACCGTTGC
ATCGGCTGGCGCAAGGTGTCTTCCGGAGAGCTGTACAAATGGCAATTCAGCAAGGGCACGAAAGCGCTTTCG
GTGGCCGTGAGCGGACCGCTGGTCCTCGACGACCCGCGCCTGATGCTACAGGCGGCGCTGGCCGATGTCGGG
ATTGCCTTCGCCATCGAGGAGGAAGTCGCCGAGCACCTCGCCGCCGGCCGCCTGGAACGGGTCCTGGCGGAT
TGGTGCGCCCCCTTTCCCGGTTTCCATCTCTATTATCCAAACCGCCGCAACCACCCGGCGGCGTTGAGCGCC
GTGATCGACCTGCTGCGCTACCCCGGCGAGGAACACCCAGGTCCCGCGTAG