ViewGene

Locus Name:
GeneID:
Location:

GeneID:2425
TrivialName: PA14_54320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54320
PAO1 Ortholog Locus:PA0771
Sequence Length:918
Protein Length:305
Start: 4818546
Stop: 4817629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04160.1|AE004512_3 (AE004512) GTP-binding protein Era [Pseudomonas aeruginosa PAO1]
Identities = 305/305 (100%), Positives = 305/305 (100%)
Sequence:
ATGACTGACATGCACGACGACATCCCCGCCGGCAGCCGTTGCGGCTACGTGGCGATCGTGGGCCGCCCCAAC
GTGGGCAAGTCCACCCTGCTCAACCACATCCTCGGGCAGAAGCTGGCGATCACCTCGCGCAAGCCGCAGACC
ACCCGTCACAACATGCTCGGGATCAAGACCGAGGGCGAGGTGCAGGCCGTCTACGTCGATACGCCCGGCCTG
CACAAGAGCGGCGAGAAGGCCCTCAACCGCTACATGAACCGTACTGCCAGCGCGGCATTGAAGGATGTCGAC
GTGGTGATCTTCGTGGTCGACCGCACCCGCTGGACCGAAGAGGACCAGATGGTCCTGGAGCGCGTGCAGTAC
GTCAGTTGCCCGGTGCTGATCGCGGTGAACAAGACCGACCGCATCGAGGAGAAGGCCGACCTGCTGCCGCAC
CTCGAATGGCTCACCCAGCAGTTGCCGAAGGCCGAGGTAGTGCCGATCTCGGCGCAGCACGGGACCAACCTG
GACGTGCTGGAGAAGCTGGTCGCCGAGCGTCTGCCGGAAAGCGAGCACTTCTTCCCCGAAGACCAGATCACC
GACCGCAGCAGCCGCTTCCTGGCCGCCGAGCTGGTCCGCGAGAAGATCATGCGCCAGCTCGGCGCCGAGCTG
CCCTACCAGATCACCGTGGAGATCGAGGAGTTCAAGCAGGAAGGTCGCATCCTGCATATCCATGCGCTGATC
CTGGTGGAGCGCGAGGGGCAGAAGAAGATCATCATCGGCGACAAGGGCGAGCGGATCAAAAGCATCGGCCAG
AACGCGCGCAAGGACATGGAAGTGCTGTTCGACTCCAAGGTCATGCTCAACCTCTGGGTCAAGGTCAAGGGC
GGCTGGTCCGACGACGAGCGTGCCCTGCGCTCGCTGGGCTACGGCGACCTCTGA
Translation:
MTDMHDDIPAGSRCGYVAIVGRPNVGKSTLLNHILGQKLAITSRKPQTTRHNMLGIKTEGEVQAVYVDTPGL
HKSGEKALNRYMNRTASAALKDVDVVIFVVDRTRWTEEDQMVLERVQYVSCPVLIAVNKTDRIEEKADLLPH
LEWLTQQLPKAEVVPISAQHGTNLDVLEKLVAERLPESEHFFPEDQITDRSSRFLAAELVREKIMRQLGAEL
PYQITVEIEEFKQEGRILHIHALILVEREGQKKIIIGDKGERIKSIGQNARKDMEVLFDSKVMLNLWVKVKG
GWSDDERALRSLGYGDL*
AnnotationID:2433GeneID:2425
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:49
Gene Name:era
Confidence Code:1
GeneProduct:GTP-binding protein Era
Cell Localization:()
Synonyms:PA0771
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1159
Secondary Functional Category(ies):Cell division
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1159, Era, GTPase [General function prediction only]
        CD-Length = 298 residues,  99.7% aligned
        Score =  404 bits (1040), Expect = 1e-113
Genomic Context:
The gene sequence lepA-lep-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa.
Comment:
ReferenceID:4853
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21999
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2425

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4076 PA0771_tr translation of PA0771 305 99.99 99.99 0 1559.0
122172 gb|AAG04160.1|AE004512_3 (AE004512) GTP-binding protein Era [Pseudomonas aeruginosa PAO1] 305 99.99 99.99 0 1559.0
122173 gb|AAD40230.1|AF123492_2 (AF123492) Era [Pseudomonas aeruginosa] 305 98.36 99.01 0 1528.0
122174 gb|AAO57672.1| (AE016871) GTP-binding protein Era [Pseudomonas syringae pv. tomato str. DC3000] 305 84.91 92.45 5 1354.0
122175 gb|AAN67056.1|AE016334_5 (AE016779) GTP-binding protein Era [Pseudomonas putida KT2440] 307 83.71 92.18 7 1341.0
GC ORFID: 45427How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0771Glimmer Score:
Start: 135361Stop: 136278
Length: 918
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0771 translation of PA0771Homolog Bit Score 605.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6220 (ORF: BLASTX 525.0), t_PA0771 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGACATGCACGACGACATCCCCGCCGGCAGCCGTTGCGGCTACGTGGCGATCGTGGGCCGCCCCAAC
GTGGGCAAGTCCACCCTGCTCAACCACATCCTCGGGCAGAAGCTGGCGATCACCTCGCGCAAGCCGCAGACC
ACCCGTCACAACATGCTCGGGATCAAGACCGAGGGCGAGGTGCAGGCCGTCTACGTCGATACGCCCGGCCTG
CACAAGAGCGGCGAGAAGGCCCTCAACCGCTACATGAACCGTACTGCCAGCGCGGCATTGAAGGATGTCGAC
GTGGTGATCTTCGTGGTCGACCGCACCCGCTGGACCGAAGAGGACCAGATGGTCCTGGAGCGCGTGCAGTAC
GTCAGTTGCCCGGTGCTGATCGCGGTGAACAAGACCGACCGCATCGAGGAGAAGGCCGACCTGCTGCCGCAC
CTCGAATGGCTCACCCAGCAGTTGCCGAAGGCCGAGGTAGTGCCGATCTCGGCGCAGCACGGGACCAACCTG
GACGTGCTGGAGAAGCTGGTCGCCGAGCGTCTGCCGGAAAGCGAGCACTTCTTCCCCGAAGACCAGATCACC
GACCGCAGCAGCCGCTTCCTGGCCGCCGAGCTGGTCCGCGAGAAGATCATGCGCCAGCTCGGCGCCGAGCTG
CCCTACCAGATCACCGTGGAGATCGAGGAGTTCAAGCAGGAAGGTCGCATCCTGCATATCCATGCGCTGATC
CTGGTGGAGCGCGAGGGGCAGAAGAAGATCATCATCGGCGACAAGGGCGAGCGGATCAAAAGCATCGGCCAG
AACGCGCGCAAGGACATGGAAGTGCTGTTCGACTCCAAGGTCATGCTCAACCTCTGGGTCAAGGTCAAGGGC
GGCTGGTCCGACGACGAGCGTGCCCTGCGCTCGCTGGGCTACGGCGACCTCTGA