ViewGene
Locus Name:
GeneID:
Location:

GeneID:2423
TrivialName: PA14_56550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56550
PAO1 Ortholog Locus:PA4349
Sequence Length:897
Protein Length:298
Start: 5042137
Stop: 5041241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07737.1|AE004851_5 (AE004851) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/298 (100%), Positives = 298/298 (100%)
Sequence:
ATGTCCTGGCAACGCTTGCTCGGCCCGCTCGACCGCCTGCCCACCGAAGGCTCCCTGGAAGACTGGCACGCC
GCCGCCCTGGCGCGCGCCGACGGTCTTGGCACCCTGGAGCGGGCGGTGCTCGGCGGACGATTGGCGGCGAGT
CCGGGCCTGGCCTTCCTCGCCGGcTACCAGGCGGCCCTGCGCGCGCTCTGGCCGGCGGCGCCGGAAGGTCTC
GGCGCGCTGTGCGTGACCGAGAAGCGCAGCGTGCGCCCGGCGGATCTGCAGACCCGCCTGGAGGGGCTGGTC
CTGCATGGACAAAAGGATTTCGTCACCGCTGGCGACAGCGCCTCCTGGTGGCTGGTGGCCGCCCGCGACGAG
GCTCCGGGGCAGCCGCCGCGACTGTCGATGACGGTGGTCCTGGCCGGCGCCCCGGGGGCGCGCCTGGAGGCG
TTGCCGGCGCTGCCGCTGATGCCGGATGTGCCGCATTCCCGCCTGTTGCTCGACGGTGCCCATTGCGAGCGC
CTGCCCGGCGATGGTTGGGACGACTACGTCAGGCCGTTCCGCCTGCTGGAGGATGTCCATGTGCTGGCGGCG
CTGGTCGGCTGGCTCTATGGGGTCGGCCATGAATGCGGCTGGCCCTCGCCGCTGCTGCTGCGCCTGGCCGGC
ATCCTCGGCGGCTGCGCCGAGGTCGCGCGGCATCCGGTCGCCTGCGTCGGCACCCAGGCGGTACTGGCTGGG
CTGTTCGAACAGTTCTCGGCGCTGGAGGGGCAACTGGATGCCGCCTTCGCCGCCAACGCCTCGACCTGGGAG
GCATTATGGCAACGCGATCGCGGCTTGCTGGCGATTGCCAACGGGGCCCGCAAAGTTCGCCTGGAGAAGGCC
TTGACCCGCCTCGGGCTTGACCCAGGTCAGTGA
Translation:
MSWQRLLGPLDRLPTEGSLEDWHAAALARADGLGTLERAVLGGRLAASPGLAFLAGYQAALRALWPAAPEGL
GALCVTEKRSVRPADLQTRLEGLVLHGQKDFVTAGDSASWWLVAARDEAPGQPPRLSMTVVLAGAPGARLEA
LPALPLMPDVPHSRLLLDGAHCERLPGDGWDDYVRPFRLLEDVHVLAALVGWLYGVGHECGWPSPLLLRLAG
ILGGCAEVARHPVACVGTQAVLAGLFEQFSALEGQLDAAFAANASTWEALWQRDRGLLAIANGARKVRLEKA
LTRLGLDPGQ*
AnnotationID:2431GeneID:2423
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4349
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17101




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2423_cdd.html


    		




 
URL:

















    ReferenceID:21995




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2423
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4074
                           PA4349_tr
                           translation of PA4349
                           298
                           99.99
                           99.99
                           0
                           1563.0
     

     
     
122168
                           gb|AAG07737.1|AE004851_5
                           (AE004851) hypothetical protein PA4349 [Pseudomonas aeruginosa PAO1]
                           298
                           99.99
                           99.99
                           0
                           1563.0
     

     
     
122169
                           gb|AAN66550.1|AE016283_9
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           299
                           57.52
                           67.89
                           5
                           856.0
     

     






      

          
GC ORFID: 45425How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4349Glimmer Score: 

          
Start: 4305813Stop: 4304917

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4349 translation of PA4349Homolog Bit Score 606.0

          
Other Homologs:  t_PA4349 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTGGCAACGCTTGCTCGGCCCGCTCGACCGCCTGCCCACCGAAGGCTCCCTGGAAGACTGGCACGCC 
GCCGCCCTGGCGCGCGCCGACGGTCTTGGCACCCTGGAGCGGGCGGTGCTCGGCGGACGATTGGCGGCGAGT 
CCGGGCCTGGCCTTCCTCGCCGGcTACCAGGCGGCCCTGCGCGCGCTCTGGCCGGCGGCGCCGGAAGGTCTC 
GGCGCGCTGTGCGTGACCGAGAAGCGCAGCGTGCGCCCGGCGGATCTGCAGACCCGCCTGGAGGGGCTGGTC 
CTGCATGGACAAAAGGATTTCGTCACCGCTGGCGACAGCGCCTCCTGGTGGCTGGTGGCCGCCCGCGACGAG 
GCTCCGGGGCAGCCGCCGCGACTGTCGATGACGGTGGTCCTGGCCGGCGCCCCGGGGGCGCGCCTGGAGGCG 
TTGCCGGCGCTGCCGCTGATGCCGGATGTGCCGCATTCCCGCCTGTTGCTCGACGGTGCCCATTGCGAGCGC 
CTGCCCGGCGATGGTTGGGACGACTACGTCAGGCCGTTCCGCCTGCTGGAGGATGTCCATGTGCTGGCGGCG 
CTGGTCGGCTGGCTCTATGGGGTCGGCCATGAATGCGGCTGGCCCTCGCCGCTGCTGCTGCGCCTGGCCGGC 
ATCCTCGGCGGCTGCGCCGAGGTCGCGCGGCATCCGGTCGCCTGCGTCGGCACCCAGGCGGTACTGGCTGGG 
CTGTTCGAACAGTTCTCGGCGCTGGAGGGGCAACTGGATGCCGCCTTCGCCGCCAACGCCTCGACCTGGGAG 
GCATTATGGCAACGCGATCGCGGCTTGCTGGCGATTGCCAACGGGGCCCGCAAAGTTCGCCTGGAGAAGGCC 
TTGACCCGCCTCGGGCTTGACCCAGGTCAGTGA