ViewGene
Locus Name:
GeneID:
Location:

GeneID:2422
TrivialName: PA14_39160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39160
PAO1 Ortholog Locus:PA1961
Sequence Length:936
Protein Length:311
Start: 3488469
Stop: 3489404
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05349.1|AE004622_11 (AE004622) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/311 (99%), Positives = 310/311 (99%)
Sequence:
ATGCCCCACGACCTCAACGACCTCTACTACTTCGCCAAGGTGGTGGAATGCGGCGGCTTCGCCGCGGCCGGA
CGCGAGACGGGGATTCCCAAGTCGCGCCTGTCGCGGCGCATCGCCGAGCTGGAGGAGCGCCTTCAGGTGCGC
CTGCTGCACCGCACGACACGCAAGCTGGCGCTCACGGAGGTCGGCGAACGCTATCTGCAGCACTGCCGCAAC
CTGCTGCTGGAAGCGGAGATGGCCGAACAGGTGATCGCCGAGCTGAGCGTCGAGCCGCGTGGCCGGCTGCGC
CTTTCCGCACCGGTGGCCATGGCCTCGAGCAACCTGGCCGACCTGTTGCCGCGGTTTCTCGAACGGCATCCG
CAGGTCCAGCTGGAAATCCTCCTGACCAACCGCCGGGTCGACCTGCTCAACGAGGGGGTGGACGTGGCACTG
CGCGTGCGCGAACTCGGCGACGAGGACCCTGCGCTGGTCTGCCGGCGCCTGGCTCCGgCGACCACGCAGATC
CTCGCCGCCCCGTCGCTGATCGCCGGGCATCGCCTGGAACATCCGGAAGACCTCGAGGACCTGCCCTTCCTC
GGCGCTATCCATAACGACCGCAAGGTCCACGCGACCCTGATCGGGCCGGATGGCAGCCGCTACCAGTTGGAA
CGCGAACCGCGCCTGGGCGTCGACGACTTCGTCCTGCGCAAGAAAGCCGCCGTGGCCGGCCTCGGCGTCACC
CTGCTGCCCGAAGGCTACTGCGACAGGGAACTGGCCGATGGCAGCCTGGTGCGCATCCTGCCGCAGTGGACC
TTGCCGAAAAGCACCATGCAGGCCGCCTACCTGCCGCGCAGCAGCCAGATTCCGGCGATCCGTGCTTTGATC
GACTTTCTCGTGGAAGCCCTGCAACGCCCCTCGGGCGAGACCGGCCCGGCCTACCGCCGCGCCCGCGAGTGA
Translation:
MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALTEVGERYLQHCRN
LLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHPQVQLEILLTNRRVDLLNEGVDVAL
RVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRLEHPEDLEDLPFLGAIHNDRKVHATLIGPDGSRYQLE
REPRLGVDDFVLRKKAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALI
DFLVEALQRPSGETGPAYRRARE*
AnnotationID:2430GeneID:2422
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:23
Gene Name:
Confidence Code:3
GeneProduct:transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA1961
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68473.1|AE016479_13 (AE016784) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 300

 Score =  338 bits (866), Expect = 3e-92
 Identities = 174/293 (59%), Positives = 216/293 (73%), Gaps = 2/293 (0%)

>gb|AAM36523.1| (AE011797) transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 333

 Score =  246 bits (627), Expect = 2e-64
 Identities = 131/294 (44%), Positives = 185/294 (62%), Gaps = 1/294 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  137 bits (344), Expect = 2e-33
Identities = 102/302 (33%), Positives = 137/302 (45%), Gaps = 8/302 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32762




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2422_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2422
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4072
                           PA1961_tr
                           translation of PA1961
                           311
                           99.35
                           99.67
                           0
                           1563.0
     

     
     
122142
                           gb|AAG05349.1|AE004622_11
                           (AE004622) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           311
                           99.35
                           99.67
                           0
                           1563.0
     

     
     
122143
                           gb|AAN68473.1|AE016479_13
                           (AE016784) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           311
                           56.59
                           70.09
                           11
                           862.0
     

     
     
122147
                           emb|CAE39064.1|
                           (BX640434) LysR-family transcriptional regulator [Bordetella parapertussis]
                           315
                           43.49
                           58.41
                           12
                           618.0
     

     
     
122146
                           emb|CAE34590.1|
                           (BX640449) LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           315
                           43.17
                           58.73
                           12
                           619.0
     

     






      

          
GC ORFID: 45424How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1961Glimmer Score: 

          
Start: 1465442Stop: 1464507

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1961 translation of PA1961Homolog Bit Score 606.0

          
Other Homologs:  t_PA2417 (ORF: BLASTX 218.0), psyr_15may02_Scaffold7_revised_gene7254 (ORF: BLASTX 205.0), t_PA1961 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCACGACCTCAACGACCTCTACTACTTCGCCAAGGTGGTGGAATGCGGCGGCTTCGCCGCGGCCGGA 
CGCGAGACGGGGATTCCCAAGTCGCGCCTGTCGCGGCGCATCGCCGAGCTGGAGGAGCGCCTTCAGGTGCGC 
CTGCTGCACCGCACGACACGCAAGCTGGCGCTCACGGAGGTCGGCGAACGCTATCTGCAGCACTGCCGCAAC 
CTGCTGCTGGAAGCGGAGATGGCCGAACAGGTGATCGCCGAGCTGAGCGTCGAGCCGCGTGGCCGGCTGCGC 
CTTTCCGCACCGGTGGCCATGGCCTCGAGCAACCTGGCCGACCTGTTGCCGCGGTTTCTCGAACGGCATCCG 
CAGGTCCAGCTGGAAATCCTCCTGACCAACCGCCGGGTCGACCTGCTCAACGAGGGGGTGGACGTGGCACTG 
CGCGTGCGCGAACTCGGCGACGAGGACCCTGCGCTGGTCTGCCGGCGCCTGGCTCCGgCGACCACGCAGATC 
CTCGCCGCCCCGTCGCTGATCGCCGGGCATCGCCTGGAACATCCGGAAGACCTCGAGGACCTGCCCTTCCTC 
GGCGCTATCCATAACGACCGCAAGGTCCACGCGACCCTGATCGGGCCGGATGGCAGCCGCTACCAGTTGGAA 
CGCGAACCGCGCCTGGGCGTCGACGACTTCGTCCTGCGCAAGAAAGCCGCCGTGGCCGGCCTCGGCGTCACC 
CTGCTGCCCGAAGGCTACTGCGACAGGGAACTGGCCGATGGCAGCCTGGTGCGCATCCTGCCGCAGTGGACC 
TTGCCGAAAAGCACCATGCAGGCCGCCTACCTGCCGCGCAGCAGCCAGATTCCGGCGATCCGTGCTTTGATC 
GACTTTCTCGTGGAAGCCCTGCAACGCCCCTCGGGCGAGACCGGCCCGGCCTACCGCCGCGCCCGCGAGTGA