ViewGene
Locus Name:
GeneID:
Location:

GeneID:2420
TrivialName: PA14_59340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59340
PAO1 Ortholog Locus:
Sequence Length:942
Protein Length:313
Start: 5285345
Stop: 5286286
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84204.1| (AY273869) PilT2 [Pseudomonas aeruginosa]
Identities = 313/313 (100%), Positives = 313/313 (100%)
Sequence:
GTGAGTGTGAACCCGATCATCCAGGCTCAGTTCGTCGACCTCTACCTCGGTGAAGGCTTCGCCGACGTGAAA
GGCCTGGCCGGCGCCGGCGCGCGCCGAGTCGAAGTGCCTCGCGAGTGGGAGTCGCACGTCCAGGAACTGCTC
CAGATCTGCAGGCAAACGCTGGAGGAGCTGCAGGACCCTGAGTTCGCCATCGTCGTCGACGGCGTTCTGCTT
CGCGTCACCCTCCTCGAAGACGCTTTCAGTGGCAGCGTCTTCGTGCTGCGCCGGTCGAGCGCCCAATTGCGG
GAGTTCCAAGAGATCGGCTATCCGAGCGAAGTGGTTTCCGCACTGATGGATCCGCAGTTGCAGGGCCTGGTC
CTGTTCTGCGGCGAGATGGCGACAGGCAAGACCAGCTCCGCCGCCTCTCTGCTCCTGGCCCGCCTGCAGGAG
TTGGGCGGGGTGGGCTGCGCCGTCGAGGACCCGCAGGAAACCAACCTCAGCGGTCAGCATGGGCTCGGCCGC
TGCATCCAGGTCAGAACCTCACGGCGCTCAGGCGGATACAGCGAGGCCCTGCTGCGCACGCTGCGGGCCGGC
GCCGACCTGGTGCTGATTGGCGAGATCCGCGACGAGGACACCGCCTACCAGGCCTGCAAGGCCTCTCTGACC
GGCAGCCTGGTGATCGCCACCATTCACGCGAAAAGCTGTCATCAGGCGATCGAGCGCTTGGTGACGCTCGCC
CAGCCACTGGCGAGAAACGCCTACGACGTGGTTGCCGAAGGCATCCAAGCTGTGATCTGCCAAGCGCTGGAG
AGCGATGGTTCCTCGCGCCGCCTGACCGCCGAGCCACTGCTGTTCACTGGCGACGACGGCCCGTCCATGCGC
GACAAGATCCGCCGAAAGGAGGCTCATCTGCTGCAGGACGACCAAGCTCGCCAGTCCCGGCAAAGCCTATGG
AGATAA
Translation:
MSVNPIIQAQFVDLYLGEGFADVKGLAGAGARRVEVPREWESHVQELLQICRQTLEELQDPEFAIVVDGVLL
RVTLLEDAFSGSVFVLRRSSAQLREFQEIGYPSEVVSALMDPQLQGLVLFCGEMATGKTSSAASLLLARLQE
LGGVGCAVEDPQETNLSGQHGLGRCIQVRTSRRSGGYSEALLRTLRAGADLVLIGEIRDEDTAYQACKASLT
GSLVIATIHAKSCHQAIERLVTLAQPLARNAYDVVAEGIQAVICQALESDGSSRRLTAEPLLFTGDDGPSMR
DKIRRKEAHLLQDDQARQSRQSLWR*
AnnotationID:2428GeneID:2420
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 06:06:05
Gene Name:pilT2
Confidence Code:2
GeneProduct:type IV B pilus protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC44045.1| (U27184) BfpF [Escherichia coli]
          Length = 331

 Score =  115 bits (287), Expect = 4e-25
 Identities = 87/311 (27%), Positives = 155/311 (49%), Gaps = 12/311 (3%)

>gb|AAF93636.1| (AE004132) twitching motility protein PilT [Vibrio cholerae]
          Length = 368

 Score = 94.0 bits (232), Expect = 1e-18
 Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 22/258 (8%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21989




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38311




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2420_cdd.html


    		




 
URL:

















    ReferenceID:38312




  
Author/Investigator(s):
        Whitchurch CB, Hobbs M, Livingston SP, Krishnapillai V, Mattick JS.





  
Title:
        Characterisation of a Pseudomonas aeruginosa twitching motility gene and evidence for a specialised protein export system widespread in eubacteria.




  
PubMed:
        1676385


MedLine:
        




    
Source:
Gene. 1991 May 15;101(1):33-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1676385&query_hl=4&itool=pubmed_docsum









           
Homologs By Global Alignment 

           

       



     
Gene ID:2420
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
122109
                           gb|AAP84204.1|
                           (AY273869) PilT2 [Pseudomonas aeruginosa]
                           313
                           99.68
                           99.99
                           0
                           1563.0
     

     






      

          
GC ORFID: 45422How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL079Glimmer Score: 

          
Start: 4549024Stop: 4549965

          
Length: 942


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL079 pilT 313 Homolog: BfpF / type IVB pilus biosynthesis; Pathogenicity-related / E.coli / plasmid pB171 (BAA84845) translation of RL079Homolog Bit Score 607.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1592 (ORF: BLASTX 322.0), t_RL079 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTGTGAACCCGATCATCCAGGCTCAGTTCGTCGACCTCTACCTCGGTGAAGGCTTCGCCGACGTGAAA 
GGCCTGGCCGGCGCCGGCGCGCGCCGAGTCGAAGTGCCTCGCGAGTGGGAGTCGCACGTCCAGGAACTGCTC 
CAGATCTGCAGGCAAACGCTGGAGGAGCTGCAGGACCCTGAGTTCGCCATCGTCGTCGACGGCGTTCTGCTT 
CGCGTCACCCTCCTCGAAGACGCTTTCAGTGGCAGCGTCTTCGTGCTGCGCCGGTCGAGCGCCCAATTGCGG 
GAGTTCCAAGAGATCGGCTATCCGAGCGAAGTGGTTTCCGCACTGATGGATCCGCAGTTGCAGGGCCTGGTC 
CTGTTCTGCGGCGAGATGGCGACAGGCAAGACCAGCTCCGCCGCCTCTCTGCTCCTGGCCCGCCTGCAGGAG 
TTGGGCGGGGTGGGCTGCGCCGTCGAGGACCCGCAGGAAACCAACCTCAGCGGTCAGCATGGGCTCGGCCGC 
TGCATCCAGGTCAGAACCTCACGGCGCTCAGGCGGATACAGCGAGGCCCTGCTGCGCACGCTGCGGGCCGGC 
GCCGACCTGGTGCTGATTGGCGAGATCCGCGACGAGGACACCGCCTACCAGGCCTGCAAGGCCTCTCTGACC 
GGCAGCCTGGTGATCGCCACCATTCACGCGAAAAGCTGTCATCAGGCGATCGAGCGCTTGGTGACGCTCGCC 
CAGCCACTGGCGAGAAACGCCTACGACGTGGTTGCCGAAGGCATCCAAGCTGTGATCTGCCAAGCGCTGGAG 
AGCGATGGTTCCTCGCGCCGCCTGACCGCCGAGCCACTGCTGTTCACTGGCGACGACGGCCCGTCCATGCGC 
GACAAGATCCGCCGAAAGGAGGCTCATCTGCTGCAGGACGACCAAGCTCGCCAGTCCCGGCAAAGCCTATGG 
AGATAA